Showing posts with label Biosphere. Show all posts
Showing posts with label Biosphere. Show all posts

Tuesday, December 22, 2015

Scientists Have Drafted a Complete Tree of Life


Maddie Stone9/19/15 3:00pm



Humans, bacteria, daffodils: We’re a diverse bunch on the surface, but trace each and every Earthling back far enough, and you’ll arrive at a common ancestor. For the first time, scientists have built a comprehensive tree of life that binds us all together.

A draft of the One Tree, published Friday in the Proceedings of the National Academies of Sciences, includes the roughly 2.3 million named species of animals, plants, fungi and microbes. It shows how all of the major branches relate to one another and traces each individual group back to its shared beginnings in a prebiotic soup 3.5 billion years ago.

“This is the first real attempt to connect the dots and put it all together,” said principal investigator Karen Cranston of Duke University in a statement. “Think of it as Version 1.0.”




This family tree of Earth’s lifeforms is considered a first draft of the 3.5-billion-year history of how life evolved and diverged. Image Credit: opentreeoflife.org

To build the tree of all life, researchers compiled thousands of smaller trees that had already been published online. One of the big challenges was simply accounting for the different taxonomic names, spellings and misspellings that crop up across scientific papers. For instance, in a strange fluke of taxonomy that I can only hope has inspired some fantastically weird artwork, spiny anteaters once shared their scientific name with moray eels.

The tree will continue to receive updates over time, of course — scientists are still discovering new species of plants, animals and fungi every year, and with our growing arsenal of genomic sequencing tools, we’re finally beginning to unlock the vast diversity of the microbial world. The team behind the tree is developing software tools that’ll enable researchers to log in and revise things as new data is collected.

In the meanwhile, the biology nerds in the room can start exploring all of this juicy data right now. The tree, along with the raw data and source code that built it, is available for free online at https://tree.opentreeoflife.org.

[Read the full scientific paper at PNAS h/t phys.org]

Thursday, November 21, 2013

New Bacterial Life-Form Discovered in NASA and ESA Spacecraft Clean Rooms

Scientific American

High atop a platform inside a clean room at the European Space Agency’s (ESA) launch site in South America, scientists painstakingly searched for microbes near the Ariane 5 rocket due to launch the  Herschel space telescope in May 2009. Only very unusual organisms can survive the repeated sterilization procedures in clean rooms, not to mention the severe lack of nutrients available. But the scientists’ careful inspection was fruitful, turning up a type of bacteria that had been seen only once before. Two years earlier this same bug had surfaced 4,000 kilometers away in the clean room at NASA’s Kennedy Space Center in Florida where engineers were preparing the  Mars lander Phoenix for launch.*
After the two discoveries, the teams joined forces to analyze the bacterium, and found it was so different from known organisms that it constituted not just a new species, but a new genus, which they described in a paper published in July in the International Journal of Systematic and Evolutionary Microbiology. “This is the first report of bugs isolated in two different clean rooms, and nowhere else,” says Parag Vaishampayan, a microbiologist at the NASA Jet Propulsion Laboratory who led the team behind the Kennedy Space Center detection.
The researchers named the bacterium Tersicoccus phoenicis. “Tersi” is Latin for clean, as in clean room, and “coccus” comes from Greek and describes the bacterium in this genus’s berrylike shape. “Phoenicis” as the species name pays homage to the Phoenix lander. The scientists determined that T. phoenicis shares less than 95 percent of its genetic sequence with its closest bacterial relative. That fact, combined with the unique molecular composition of its cell wall and other properties, was enough to classify Tersicoccus phoenicis as part of a new genus—the next taxonomic level up from species in the system used to classify biological organisms. The researchers are not sure yet if the bug lives only in clean rooms or survives elsewhere but has simply escaped detection so far, says Christine Moissl-Eichinger of the University of Regensburg in Germany, who identified the species at the ESA’s Guiana Space Center in Kourou, French Guiana. Some experts doubt that Tersicoccus phoenicis would fare well anywhere other than a clean room. “I think these bugs are less competitive, and they just don't do so well in normal conditions,” says Cornell University astrobiologist Alberto Fairén, who was not involved in the analysis of the new genus. “But when you systematically eliminate almost all competition in the clean rooms, then this genus starts to be prevalent.”
Only the hardiest of microbes can survive inside a spacecraft clean room, where the air is stringently filtered, the floors are cleansed with certified cleaning agents, and surfaces are wiped with alcohol and hydrogen peroxide, then heated to temperatures high enough to kill almost any living thing. Any human who enters the room must be clad head to foot in a “bunny suit” with gloves, booties, a hat and a mask, so that the only exposed surface is the area around a person’s eyes. Even then, the technician can enter only after stomping on sticky tape on the floor to remove debris from the soles of her booties, and passing through an “air shower” to blow dust away from the rest of her. “It’s the cleanest place on Earth,” Vaishampayan says.
Scientists go to all this trouble for the purpose of “planetary protection”—which usually means protecting other planets from contamination by microbes originating on Earth. Most spacefaring countries have agreed to follow guidelines from the International Council for Science’s Committee on Space Research to reduce the chances of their vehicles carrying Earth organisms to other planets. The clean room procedures also safeguard against scientists mistaking Earthly microbes as extraterrestrial in origin if they are discovered on another planet, having caught a ride with a man-made spacecraft. “The whole idea of collecting information about what kind of bugs we have in the spacecraft assembly facility is to have baseline information so that in the future, if you find it on Mars, you have some grounds to rule out the possibility that it came from Mars,” Vaishampayan says.
The fact that bugs like T. phoenicis have proved hardy enough to survive in clean rooms doesn’t necessarily mean they’re likely to contaminate another planet. And the chances of a spacecraft like Phoenix mistaking this species as Martian life are very low, experts say. “This is a minimal risk considering that the portions of the spacecraft that are actually part of the experimental or sample collecting apparatus are kept exceptionally clean, if not sterile,” says Peter Smith, Phoenix’s principal investigator. “The surface environment on Mars is superlow pressure, no water, high [in] ultraviolet flux and high [in] cosmic radiation. In other words, a terrible place for life, even microbes that like clean rooms.”
Still, researchers would like to know whether such organisms could survive the trip from Earth to Mars, and survive on the Red Planet once they get there. To answer this question, scientists launched spores of the bacteria Bacillus subtilis and B. pumilus to the International Space Station in February 2008 and mounted them outside the orbiting laboratory for a year and a half. The experiment, called PROTECT, subjected the organisms to the vacuum of space, extreme temperature fluctuations and a barrage of radiation. Although many spores died, some survived, proving that certain bugs could successfully hitchhike to Mars. The most damaging effects came from the ultraviolet radiation the spores experienced outside Earth’s protective atmosphere. To survive, “either they have to hide or come up with an ingenious mechanism of repairing the DNA damage,” says Vaishampayan, who worked on the PROTECT experiment.
There is no proof that T. phoenicis actually accompanied Phoenix to Mars, but it is possible. “This genus has surely traveled to Mars already, recently in one or more of our spacecraft—they live comfortably in the clean rooms where we build the craft, right?—and maybe even onboard meteorites millions or billions of years ago,” Fairén says. “Therefore, if these bugs can actually survive on Mars, they must be there already.” Ultimately, the discovery of bacteria as resilient as T. phoenicis just goes to show how robust life is. The finding suggests that “once life originates on a planet, it has great adaptive power and can survive a great variety of environmental stresses,” says Dirk Schulze-Makuch of Washington State University, who wasn’t involved in the study of the new genus. “The $1-million question, of course, is: Under which conditions life can originate in the first place?”
*Correction (11/20/13): The last two sentences in this paragraph were edited after posting. The earlier version stated that the new bacterium genus was collected at Kennedy Space Center in 2011. It was actually found in 2007, before the launch of the Phoenix Mars lander, which lifted off August 4, 2007.


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Wednesday, October 2, 2013

Biome

iome

The planet Earth
 
Biomes are climatically and geographically defined as contiguous areas with similar climatic conditions on the Earth, such as communities of plants, animals, and soil organisms,[1] and are often referred to as ecosystems. Some parts of the earth have more or less the same kind of abiotic and biotic factors spread over a large area, creating a typical ecosystem over that area. Such major ecosystems are termed as biomes. Biomes are defined by factors such as plant structures (such as trees, shrubs, and grasses), leaf types (such as broadleaf and needleleaf), plant spacing (forest, woodland, savanna), and climate. Unlike ecozones, biomes are not defined by genetic, taxonomic, or historical similarities. Biomes are often identified with particular patterns of ecological succession and climax vegetation (quasiequilibrium state of the local ecosystem). An ecosystem has many biotopes and a biome is a major habitat type. A major habitat type, however, is a compromise, as it has an intrinsic inhomogeneity. Some examples of habitats are ponds, trees, streams, creeks, under rocks and burrows in the sand or soil.
The biodiversity characteristic of each extinction, especially the diversity of fauna and subdominant plant forms, is a function of abiotic factors and the biomass productivity of the dominant vegetation. In terrestrial biomes, species diversity tends to correlate positively with net primary productivity, moisture availability, and temperature.[2]
Ecoregions are grouped into both biomes and ecozones.
A fundamental classification of biomes are:
  1. Terrestrial (land) biomes
  2. Aquatic biomes (including freshwater biomes and marine biomes)
Biomes are often known in English by local names. For example, a temperate grassland or shrubland biome is known commonly as steppe in central Asia, prairie in North America, and pampas in South America. Tropical grasslands are known as savanna in Australia, whereas in southern Africa it is known as certain kinds of veld (from Afrikaans).
Sometimes an entire biome may be targeted for protection, especially under an individual nation's biodiversity action plan.
Climate is a major factor determining the distribution of terrestrial biomes. Among the important climatic factors are:
  • Latitude: Arctic, boreal, temperate, subtropical, tropical
  • Humidity: humid, semihumid, semiarid, and arid
    • seasonal variation: Rainfall may be distributed evenly throughout the year or be marked by seasonal variations.
    • dry summer, wet winter: Most regions of the earth receive most of their rainfall during the summer months; Mediterranean climate regions receive their rainfall during the winter months.
  • Elevation: Increasing elevation causes a distribution of habitat types similar to that of increasing latitude.
The most widely used systems of classifying biomes correspond to latitude (or temperature zoning) and humidity. Biodiversity generally increases away from the poles towards the equator and increases with humidity.

Biome classification schemes

In this scheme, climates are classified based on the biological effects of temperature and rainfall on vegetation under the assumption that these two abiotic factors are the largest determinants of the type of vegetation found in an area. Holdridge uses the four axes to define 30 so-called "humidity provinces", which are clearly visible in the Holdridge diagram. While his scheme largely ignores soil and sun exposure, Holdridge did acknowledge that these, too, were important factors in biome determination.

Holdridge scheme

Biomes are classification schemes defined by climatic parameters. Particularly in the 1970s and 1980s, there was a significant push to understand the relationships between these climatic parameters and properties of ecosystem energetics because such discoveries would enable the prediction of rates of energy capture and transfer among components within ecosystems. Such a study was conducted by Sims et al. (1978) on North American grasslands. The study found a positive logistic correlation between evapotranspiration in mm/yr and above-ground net primary production in g/m2/yr. More general results from the study were that precipitation and water use lead to above-ground primary production, solar radiation and temperature lead to belowground primary production (roots), and temperature and water lead to cool and warm season growth habit.[3] These findings help explain the categories used in Holdridge’s bioclassification scheme, which were then later simplified in Whittaker’s. The number of classification schemes and the variety of determinants used in those schemes, however, should be taken as strong indicators that biomes do not all fit perfectly into the classification schemes created.

Whittaker's biome-type classification scheme

Whittaker appreciated biome-types as a representation of the great diversity of the living world, and saw the need to establish a simple way to classify them. He based his classification scheme on two abiotic factors: precipitation and temperature. His scheme can be seen as a simplification of Holdridge's, one more readily accessible, but perhaps missing the greater specificity that Holdridge's provides.
Whittaker based his representation of global biomes on both previous theoretical assertions and an ever-increasing empirical sampling of global ecosystems. He was in a unique position to make such a holistic assertion because he had previously compiled a review of biome classification.[4]

Key definitions for understanding Whittaker's scheme

  • Physiognomy: The apparent characteristics, outward features, or appearance of ecological communities or species
  • Biome: a grouping of terrestrial ecosystems on a given continent that are similar in vegetation structure, physiognomy, features of the environment and characteristics of their animal communities
  • Formation: a major kind of community of plants on a given continent
  • Biome-type: grouping of convergent biomes or formations of different continents, defined by physiognomy
  • Formation-type: a grouping of convergent formations
Whittaker's distinction between biome and formation can be simplified: formation is used when applied to plant communities only, while biome is used when concerned with both plants and animals. Whittaker's convention of biome-type or formation-type is simply a broader method to categorize similar communities.[5]

Whittaker's parameters for classifying biome-types

Whittaker, seeing the need for a simpler way to express the relationship of community structure to the environment, used what he called “gradient analysis” of ecocline patterns to relate communities to climate on a worldwide scale. Whittaker considered four main ecoclines in the terrestrial realm.[5]
  1. Intertidal levels: The wetness gradient of areas that are exposed to alternating water and dryness with intensities that vary by location from high to low tide
  2. Climatic moisture gradient
  3. Temperature gradient by altitude
  4. Temperature gradient by latitude
Along these gradients, Whittaker noted several trends that allowed him to qualitatively establish biome-types.
  • The gradient runs from favorable to extreme, with corresponding changes in productivity.
  • Changes in physiognomic complexity vary with the favorability of the environment (decreasing community structure and reduction of stratal differentiation as the environment becomes less favorable).
  • Trends in diversity of structure follow trends in species diversity; alpha and beta species diversities decrease from favorable to extreme environments.
  • Each growth-form (i.e. grasses, shrubs, etc.) has its characteristic place of maximum importance along the ecoclines.
  • The same growth forms may be dominant in similar environments in widely different parts of the world.
Whittaker summed the effects of gradients (3) and (4) to get an overall temperature gradient, and combined this with gradient (2), the moisture gradient, to express the above conclusions in what is known as the Whittaker classification scheme. The scheme graphs average annual precipitation (x-axis) versus average annual temperature (y-axis) to classify biome-types.

Walter system

The Heinrich Walter classification scheme, developed by Heinrich Walter, a German ecologist, differs from both the Whittaker and Holdridge schemes because it takes into account the seasonality of temperature and precipitation. The system, also based on precipitation and temperature, finds 9 major biomes, with the important climate traits and vegetation types summarized in the accompanying table. The boundaries of each biome correlate to the conditions of moisture and cold stress that are strong determinants of plant form, and therefore the vegetation that defines the region. Extreme conditions, such as flooding in a swamp, can create different kinds of communities within the same biome.
  • I: Equatorial
    • Always moist and lacking temperature seasonality
    • Evergreen tropical rain forest
  • II: Tropical
    • Summer rainy season and cooler “winter” dry season
    • Seasonal forest, scrub, or savanna
  • III: Subtropical
    • Highly seasonal, arid climate
    • Desert vegetation with considerable exposed surface
  • IV: Mediterranean
    • Winter rainy season and summer drought
    • Sclerophyllous (drought-adapted), frost-sensitive shrublands and woodlands
  • V: Warm temperate
    • Occasional frost, often with summer rainfall maximum
    • Temperate evergreen forest, somewhat frost-sensitive
  • VI: Nemoral
    • Moderate climate with winter freezing
    • Frost-resistant, deciduous, temperate forest
  • VII: Continental
    • Arid, with warm or hot summers and cold winters
    • Grasslands and temperate deserts
  • VIII: Boreal
    • Cold temperate with cool summers and long winters
    • Evergreen, frost-hardy, needle-leaved forest (taiga)
  • IX: Polar
    • Very short, cool summers and long, very cold winters
    • Low, evergreen vegetation, without trees, growing over permanently frozen soils

Bailey system

Robert G. Bailey almost developed a biogeographical classification system for the United States in a map published in 1976. He subsequently expanded the system to include the rest of North America in 1981, and the world in 1989. The Bailey system, based on climate, is divided into seven domains (polar, humid temperate, dry, humid, and humid tropical), with further divisions based on other climate characteristics (subarctic, warm temperate, hot temperate, and subtropical; marine and continental; lowland and mountain).[6]
  • 100 Polar Domain
    • 120 Tundra Division (Koppen: Ft)
    • M120 Tundra Division – Mountain Provinces
    • 130 Subarctic Division (Koppen: E)
    • M130 Subarctic Division – Mountain Provinces
  • 200 Humid Temperate Domain
    • 210 Warm Continental Division (Koppen: portion of Dcb)
    • M210 Warm Continental Division – Mountain Provinces
    • 220 Hot Continental Division (Koppen: portion of Dca)
    • M220 Hot Continental Division – Mountain Provinces
    • 230 Subtropical Division (Koppen: portion of Cf)
    • M230 Subtropical Division – Mountain Provinces
    • 240 Marine Division (Koppen: Do)
    • M240 Marine Division – Mountain Provinces
    • 250 Prairie Division (Koppen: arid portions of Cf, Dca, Dcb)
    • 260 Mediterranean Division (Koppen: Cs)
    • M260 Mediterranean Division – Mountain Provinces
  • 300 Dry Domain
    • 310 Tropical/Subtropical Steppe Division
    • M310 Tropical/Subtropical Steppe Division – Mountain Provinces
    • 320 Tropical/Subtropical Desert Division
    • 330 Temperate Steppe Division
    • 340 Temperate Desert Division
  • 400 Humid Tropical Domain
    • 410 Savanna Division
    • 420 Rainforest Division

WWF system

A team of biologists convened by the World Wide Fund for Nature (WWF) developed an ecological land classification system that identified fourteen biomes,[7] called major habitat types, and further divided the world's land area into 867 terrestrial ecoregions. Each terrestrial ecoregion has a specific EcoID, format XXnnNN (XX is the ecozone, nn is the biome number, NN is the individual number). This classification is used to define the Global 200 list of ecoregions identified by the WWF as priorities for conservation. The WWF major habitat types are:

Freshwater biomes

According to the WWF, the following are classified as freshwater biomes:[8]
  • Streams and rivers

Realms or ecozones (terrestrial and freshwater, WWF)

Marine biomes

Marine biomes (H) (major habitat types), Global 200 (WWF)
Biomes of the coastal and continental shelf areas (neritic zoneList of ecoregions (WWF))
Realms or ecozones (marine, WWF)
  • North temperate Atlantic
  • Eastern tropical Atlantic
  • Western tropical Atlantic
  • South temperate Atlantic
  • North temperate Indo-Pacific
  • Central Indo-Pacific
  • Eastern Indo-Pacific
  • Western Indo-Pacific
  • South temperate Indo-Pacific
  • Southern Ocean
  • Antarctic
  • Arctic
  • Mediterranean
Other marine habitat types
Major habitats, nonglobal 200 (WWF)

Summary – ecological taxonomy (WWF)

Example

Anthropogenic biomes

Humans have fundamentally altered global patterns of biodiversity and ecosystem processes. As a result, vegetation forms predicted by conventional biome systems are rarely observed across most of Earth's land surface. Anthropogenic biomes provide an alternative view of the terrestrial biosphere based on global patterns of sustained direct human interaction with ecosystems, including agriculture, human settlements, urbanization, forestry and other uses of land. Anthropogenic biomes offer a new way forward in ecology and conservation by recognizing the irreversible coupling of human and ecological systems at global scales and moving us toward an understanding how best to live in and manage our biosphere and the anthropogenic biosphere we live in. The main biomes in the world are freshwater, marine, coniferous, deciduous, ice, mountains, boreal, grasslands, tundra, and rainforests.

Major anthropogenic biomes

  • Dense settlements
  • Villages
  • Croplands
  • Rangelands
  • Forested

Sunday, September 29, 2013

Biosphere 2

From Wikipedia, the free encyclopedia


Coordinates: 32°34′43.60″N 110°51′02.14″W


Biosphere 2
 
Biosphere 2 is an Earth systems science research facility. Owned by the University of Arizona since 2011. Its mission is to serve as a center for research, outreach, teaching and lifelong learning about Earth, its living systems, and its place in the universe. It is a 3.14-acre (1.27-hectare)[1] structure originally built to be an artificial, materially closed ecological system in Oracle, Arizona, US by Space Biosphere Ventures, a joint venture whose principal officers were John P. Allen, inventor and Executive Director, and Margret Augustine, CEO. Constructed between 1987 and 1991, it explored the web of interactions within life systems in a structure with five areas based on biomes, and an agricultural area and human living and working space to study the interactions between humans, farming and technology with the rest of nature. It also explored the use of closed biospheres in space colonization, and allowed the study and manipulation of a biosphere without harming Earth's. The name comes from Earth's biosphere, "Biosphere 1". Project funding came primarily from the joint venture's financial partner, Ed Bass' Decisions Investment, costing US$200 million from 1985 to 2007, including land, support research greenhouses, test module, and staff facilities.[citation needed]
Biosphere 2 sits on a sprawling 40-acre (16-hectare) science campus that is open to the public.
 
The size of two and a half football fields, it remains the largest closed system created.[2] The glass facility is elevated 4,000 feet (1,200 m) above sea level at the base of the Santa Catalina Mountains, half an hour outside Tucson.[3]

Biosphere 2 contained representative biomes: a 1,900 square meter rainforest, an 850 square meter ocean with a coral reef, a 450 square meter mangrove wetlands, a 1,300 square meter savannah grassland, a 1,400 square meter fog desert, a 2,500 square meter agricultural system, a human habitat, and a below-ground infrastructure. Heating and cooling water circulated through independent piping systems and passive solar input through the glass space frame panels covering most of the facility, and electrical power was supplied into Biosphere 2 from an onsite natural gas energy center.[4]
Biosphere 2 had two closure experiments, Missions 1 and 2, during which the structure was sealed with researchers living inside. The first, with a crew of eight people, ran for two years from 1991 to 1993. Following a six-month transition period during which researchers entered the facility through airlock doors and conducted research and system engineering improvements, a second closure with a crew of seven people was conducted March 1994 – September 1994. In the course of that second mission, a dispute over management of the financial aspects of the project caused the on-site management to be locked out, and the mission itself to be ended prematurely. The sealed nature of the structure allowed scientists to monitor the continually changing chemistry of the air, water and soil contained within. Health of the human crew was monitored by a medical doctor inside and an outside medical team.[citation needed]
In 1995, Columbia University took management of the facility for research and as a campus until 2003. In 1996, they changed the virtually airtight, materially closed structure designed for closed system research, to a "flow-through" system, and halted closed system research. They manipulated carbon dioxide levels for global warming research, and injected desired amounts of carbon dioxide, venting as needed.[5]
By 2006, the property, in exurban Tucson, was slated to be redeveloped for a planned community.[6] As of June 5, 2007, the property including surrounding land, 1,650 acres (6.7 km2), had been sold to a residential home developer for US$50 million. A development including homes and a resort hotel was planned for a portion of the land. The Biosphere remained open for tours.[7]
On June 26, 2007, the University of Arizona announced it would take over research at the Biosphere 2. The announcement ended fears that the glass vivarium would be demolished. University officials said private gifts and grants enabled them to cover research and operating costs for three years with the possibility of extending funding for ten years.[8] It was extended for ten years, and is now engaged in research projects including research into the terrestrial water cycle and how it relates to ecology, atmospheric science, soil geochemistry, and climate change. In June 2011, the University announced that it would assume full ownership of Biosphere 2, effective July 1.[9]
The agricultural area of Biosphere 2 was planted a year before closure, and biospherians managed their farm, growing and processing food, so that there would be a supply of food grown inside when the full closure began. During week-long periods of simulated full closure, data were gathered on agricultural operations and productivity, and crew adapted to their workload.[citation needed]
These mini-missions were too short to attempt any meaningful agriculture or animal husbandry. No data were gathered that might have been useful in estimating whether the Biosphere itself was capable of sustaining eight people for two years.[citation needed]

First mission

The first closed mission lasted from September 26, 1991 to September 26, 1993. The crew were: medical doctor and researcher Roy Walford, Jane Poynter, Taber MacCallum, Mark Nelson, Sally Silverstone, Abigail Alling (a late replacement for Silke Schneider), Mark Van Thillo, and Linda Leigh.[citation needed]
The agricultural system produced 83% of the total diet, which included crops of bananas, papayas, sweet potatoes, beets, peanuts, lablab and cowpea beans, rice, and wheat.[10][11] No toxic chemicals could be used, since they would impact health. During the first year the eight inhabitants reported continual hunger. During the second year, the crew produced over a ton more food, average caloric intake increased, and they regained some weight lost during the first year.[citation needed]
They consumed the same low-calorie, nutrient-dense diet which Roy Walford had studied in his research on extending lifespan through diet. [12] Medical markers indicated the health of the crew during the two years was excellent. Strikingly, they showed the same improvement in health indices such as lowering of blood cholesterol, blood pressure, enhancement of immune system. They lost an average of 16% of their pre-entry body weight before stabilizing and regaining some weight during their second year.[13] Subsequent studies showed that the biospherians' metabolism became more efficient at extracting nutrients from their food as an adaptation to the low-calorie, high nutrient diet.[14]
Some of the domestic animals that were planned for the agricultural area during the first mission include four pygmy goats and one billy goat from the plateau region of Nigeria, 35 hens and three roosters (a mix of Indian jungle fowl (Gallus gallus), Japanese silky bantam, and a hybrid of these), two sows and one boar pig (feral), as well as tilapia fish grown in a rice and azolla pond system originating millennia ago in China.[15]
A strategy of "species-packing" was practiced to ensure that food webs and ecological function could be maintained if some species did not survive. The fog desert area became more chaparral due to condensation from the space frame. The savannah was seasonally active; its biomass was cut and stored by the crew as part of their management of carbon dioxide. Rainforest pioneer species grew rapidly, but trees there and in the savannah suffered from etiolation and weakness caused by lack of stress wood, normally created in response to winds in natural conditions. Corals reproduced in the ocean area and crew helped maintain ocean system health by hand-harvesting algae from the corals, manipulating calcium carbonate and pH levels to prevent the ocean becoming too acidic, and by installing an improved protein skimmer to supplement the algae turf scrubber system originally installed to remove excess nutrients.[16] The mangrove area developed rapidly but with less understory than a typical wetland possibly because of reduced light levels.[17]
Biosphere 2 suffered from CO2 levels that "fluctuated wildly" and most of the vertebrate species and all of the pollinating insects died.[18] Insect pests, like cockroaches, boomed. In practice, ants, a companion to one of the tree species (Cecropia) in the Rain Forest, had been introduced. By 1993 the tramp ant species Paratrechina longicornis, local to the area had been unintentionally sealed in and had come to dominate.[19] Galagos reproduced in Biosphere 2, but a number of pollinating insects were lost to ant predation and several bird species were lost. However, many of the pollinating duties were performed by those ants and cockroaches.[citation needed]

Challenges

Among the problems and miscalculations encountered in the first mission were overstocked fish clogging systems, unanticipated condensation making the "desert" too wet, population explosions of greenhouse ants and cockroaches, and morning glories overgrowing the "rainforest", blocking out other plants.[20][21]
There was controversy when the public learned that the project had allowed an injured member to leave and return, carrying new material inside. The team claimed the only new supplies brought in were plastic bags, but others accused them of bringing food and other items. More criticism was raised when it was learned that, likewise, the project had been pumping oxygen inside, to make up for a failure in the balance of the system that resulted in the amount of oxygen steadily declining.[22]
The oxygen inside the facility, which began at 20.9%, fell at a steady pace and after 16 months was down to 14.5%. This is equivalent to the oxygen availability at an elevation of 4,080 meters (13,400 ft).[23] Since some biospherians were starting to have symptoms like sleep apnea and fatigue, Walford and the medical team decided to boost oxygen with injections in January and August 1993.
Daily fluctuation of carbon dioxide dynamics was typically 600 ppm because of the strong drawdown during sunlight hours by plant photosynthesis, followed by a similar rise during the nighttime when system respiration dominated. As expected, there was also a strong seasonal signature to CO2 levels, with wintertime levels as high as 4,000-4,500 ppm and summertime levels near 1,000 ppm. The crew worked to manage the CO2 by occasionally turning on a CO2 scrubber, activating and de-activating the desert and savannah through control of irrigation water, cutting and storing biomass to sequester carbon, and utilizing all potential planting areas with fast-growing species to increase system photosynthesis.[24]
Many suspected the drop in oxygen was due to microbes in the soil. The soils were selected to have enough carbon to provide for the plants of the ecosystems to grow from infancy to maturity, a plant mass increase of perhaps 20 tons (18,000 kg).[25] The release rate of that soil carbon as carbon dioxide by respiration of soil microbes was an unknown that the Biosphere 2 experiment was designed to reveal. El Niño weather systems also blocked necessary sunlight resulting in lower oxygen production.[citation needed]
The respiration rate was faster than the photosynthesis (possibly in part due to relatively low light penetration through the glazed structure) resulting in a slow decrease of oxygen. A mystery accompanied the oxygen decline: the corresponding increase in carbon dioxide did not appear. This concealed the underlying process until an investigation by Jeff Severinghaus and Wallace Broecker of Columbia University's Lamont Doherty Earth Observatory using isotopic analysis showed that carbon dioxide was reacting with exposed concrete inside Biosphere 2 to form calcium carbonate, thereby sequestering both carbon and oxygen.[26]
The discovery of the small difference between rate of respiration and rate of photosynthesis depended on the extremely low leak rate of Biosphere 2. It was shown by Dempster that had Biosphere 2 leaked as much as other closed ecological test chambers, the wash-out effect of outside air mixing in would have concealed the entire imbalance.[citation needed]

Second mission

During the transition period between missions, extensive research and system improvements had been undertaken. Concrete was sealed to prevent uptake of carbon dioxide. The second mission began on March 6, 1994, with an announced run of ten months. Crew was Norberto Romo (Capt.), John Druitt, Matt Finn, Pascale Maslin, Charlotte Godfrey, Rodrigo Romo and Tilak Mahato. The second crew achieved complete sufficiency in food production.[27]
On April 1, 1994 a severe dispute within the management team led to the ousting of the on-site management by federal marshals serving a restraining order, leaving management of the mission to the Bannon & Co. team from Beverly Hills, California.[28]
At 3 am on April 5, 1994, Abigail Alling and Mark Van Thillo, members of the first crew, allegedly vandalized the project from outside,[29] opening one double-airlock door and three single door emergency exits, leaving them open for approximately fifteen minutes. Five panes of glass were also broken. About 10% of the biosphere's air was exchanged with the outside during this time, according to Donella Meadows, who had a communication from Ms. Alling in which she explained that they wanted to give those inside the choice of continuing or leaving, as she didn't know what they had been told of the new situation.[30]
Soon after that, the captain Norberto Romo (by then married to Margret Augustine) left the Biosphere. He was replaced by Bernd Zabel, who had been nominated as captain of the first mission but who was replaced at the last minute. Two months later, Matt Smith replaced Matt Finn.[citation needed]
The ownership and management company Space Biospheres Ventures was officially dissolved on June 1, 1994. This left the scientific and business management of the mission to the interim turnaround team, who had been contracted by the financial partner, Decisions Investment Co.[23]
Mission 2 was ended prematurely on September 6, 1994.[23]

Columbia University

After a successful turnaround by Bannon & Co. in December 1995 the Biosphere 2 owners transferred management to Columbia University of New York City which embarked on a successful eight-year run at the Biosphere 2 campus.[31] Columbia ran Biosphere 2 as a research site and campus until 2003,[32] at which time management reverted to the owners. During Columbia's tenure, Columbia students would often spend one semester at the site.[citation needed]

Site sold

On January 10, 2005, Decisions Investments Corporation, owner of Biosphere 2, announced that the project's 1,600-acre (650 ha) campus was for sale. They preferred a research use to be found for the complex but were not excluding buyers with different intentions, such as universities, hotels, resorts, spas, etc. In June, 2007 Associated Press announced a $50 million sale to CDO Ranching & Development, L.P.[7] 1,500 houses and a resort hotel were planned, but the main structure was still to be available for research and educational use. CDO Ranching & Development has purchased the adjacent property and is planning to build hotels there.[citation needed]

Under new management

On June 26, 2007, the University of Arizona announced that it took over management of Biosphere 2, using the site as a laboratory to study climate change, among other things.[citation needed]

Acquisition by University of Arizona

On June 27, 2011, the University announced that it would assume full ownership of Biosphere 2, effective July 1. CDO Ranching & Development donated the land, Biosphere buildings and several other support and administrative buildings. The Philecology Foundation (a nonprofit research foundation founded by Ed Bass) pledged US$20 million for the ongoing science and operations.[9]

Engineering

Biosphere 2 from the inside. Seen here are the Savanna (foreground) and Ocean (background) sections.
 
The Coastal Fog Desert section of Biosphere on 2 August .
 
The Crew Quarters.
 
The above-ground physical structure of Biosphere 2 was made of steel tubing and high-performance glass and steel frames. The frame and glazing materials were designed and made to specification by a firm run by a one-time associate of Buckminster Fuller, Peter Pearce (Pearce Structures, Inc.). The window seals and structures had to be designed to be almost perfectly airtight, such that the air exchange would be extremely slow, to avoid damage to the experimental results.[citation needed]
During the day, the heat from the sun caused the air inside to expand and during the night it cooled and contracted. To avoid having to deal with the huge forces that maintaining a constant volume would create, the structure had large diaphragms kept in domes called "lungs".[citation needed]
Since opening a window was impossible, the structure also required huge air conditioners to control the temperature and avoid killing the plants within. For every unit of solar energy that entered the structure, the air conditioners would expend approximately three times as much energy to cool the habitat back down.[citation needed]

Science

A special issue of the Ecological Engineering journal edited by Marino and Howard T. Odum (1999), published as "Biosphere 2: Research Past and Present" (Elsevier, 1999) represents the most comprehensive assemblage of collected papers and findings from Biosphere 2. The papers range from calibrated models that describe the system metabolism, hydrologic balance, and heat and humidity, to papers that describe rainforest, mangrove, ocean, and agronomic system development in this carbon dioxide-rich environment.[33][34]

Praise and criticism

One view of Biosphere 2 was that it was "the most exciting scientific project to be undertaken in the U.S. since President John F. Kennedy launched us toward the moon".[35] Others called it "New Age drivel masquerading as science".[36] The Institute for Ecotechnics, which awarded Margret Augustine and other Biospherians their science credentials, was shown by a CBC documentary to be housed in an art gallery and café in London.[37] The Institute is indeed housed to this day in a multi-leveled old Londonian building which includes a prestigious Art Gallery for contemporary non-Western art on the first floor. John Allen and Roy Walford did have mainstream credentials. John Allen held a degree in Metallurgical-Mining Engineering from the Colorado School of Mines, and an MBA from the Harvard Business School.[15][38] Roy Walford received his doctorate of medicine from the University of Chicago and taught at UCLA as a Professor of Pathology for 35 years. Shortly after leaving Biosphere 2's first mission, Mark Nelson obtained his Ph. D under Professor T. H. Odum in Ecological Engineering.[citation needed]
Questioning the credentials of the participants (despite the contribution in the preparation phase of Biosphere 2 of worldwide top-level scientists and among others the Russian Academy of Science), Marc Cooper wrote[39] that "the group that built, conceived, and directs the Biosphere project is not a group of high-tech researchers on the cutting edge of science but a clique of recycled theater performers that evolved out of an authoritarian—and decidedly non-scientific—personality cult". He was referring to the Synergia Ranch in New Mexico, where indeed many of the Biospherians did practice theater under John Allen's leadership, and began to develop the ideas behind Biosphere 2.[40] However, the original Biosphere 2 Science Advisory Committee, chaired by Tom Lovejoy of the Smithsonian Institution, in the report of August 1992 reported: "The committee is in agreement that the conception and construction of Biosphere 2 were acts of vision and courage. The scale of Biosphere 2 is unique and Biosphere 2 is already providing unexpected scientific results not possible through other means (notably the documented, unexpected decline in atmospheric oxygen levels.) Biosphere 2 will make important scientific contributions in the fields of biogeochemical cycling, the ecology of closed ecological systems, and restoration ecology." Furthermore, Columbia University assembled outside scientists to evaluate the potential of the facility, and concluded the following: "A group of world-class scientists got together and decided the Biosphere 2 facility is an exceptional laboratory for addressing critical questions relative to the future of Earth and its environment."[41]
One of their own scientific consultants came to be critical of the enterprise, too. Dr. Ghillean Prance, director of the Royal Botanical Gardens in Kew, designed the rainforest biome inside the Biosphere. Although he later recanted, acknowledging the unique scope of this experiment and contributed to its success as a consultant, in a 1983 interview (8 years before the start of the experiment), Prance said, "I was attracted to the Institute of Ecotechnics because funds for research were being cut and the institute seemed to have a lot of money which it was willing to spend freely. Along with others, I was ill-used. Their interest in science is not genuine. They seem to have some sort of secret agenda, they seem to be guided by some sort of religious or philosophical system."[42] After this statement, however, he initiated a renewed collaboration with Biosphere 2 and became a consultant from 1987 to 1993.[citation needed]

The ethnosphere: psychology and conflict

Much of the evidence for isolated human groups comes from psychological studies of scientists overwintering in Antarctic research stations.[43] The study of this phenomenon is "confined environment psychology", and according to Jane Poynter[44][45] not nearly enough of it was brought to bear on Biosphere 2.
Before the first closure mission was half over, the group had split into two factions and people who had been intimate friends had become implacable enemies, barely on speaking terms. Potential conflict had been pointed to as a possibility since this was the first experiment ever in closed, confined, system, over such a "long" period of time.[citation needed]
The faction inside the bubble came from a rift between the joint venture partners on how the science should proceed, as biospherics or as specialist ecosystem studies (perceived as reductionist and precisely contrary to the raison d'être of the experiment). The faction that included Poynter felt strongly that they should be making formal proposals for research for the Science Advisory Committee to evaluate. The other faction included Abigail Alling, the titular director of research[46] inside the bubble, and who sided with John Allen in blocking that move. On February 14, the entire SAC resigned.[47] Time Magazine wrote:
Now, the veneer of credibility, already bruised by allegations of tamper-prone data, secret food caches and smuggled supplies, has cracked ... the two-year experiment in self-sufficiency is starting to look less like science and more like a $150 million stunt.[48]
Undoubtedly the lack of oxygen and the calorie restricted nutrient dense diet[49] contributed to low morale. The Alling faction feared that the Poynter group were prepared to go so far as to import food, if it meant making them fitter to carry out research projects. They considered that would be a project failure by definition.
In November 1992, the hungry Biospherians began eating emergency food supplies that had not been grown inside the bubble.[50] Poynter made Chris Helms, PR Director for the enterprise, aware of this. She was promptly dismissed by Margret Augustine, CEO of Space Biospheres Ventures, and told to come out of the biosphere. This order was, however, never carried out. Poynter writes that she simply decided to stay put, correctly reasoning that the order could not be enforced without effectively terminating the closure.

See also