Showing posts with label flu. Show all posts
Showing posts with label flu. Show all posts

Thursday, July 3, 2014

US-based scientist makes potent version of H1N1 flu

H1N1
H1N1 virus. Credit: C. S. Goldsmith and A. Balish, CDC
A US-based Japanese scientist said Wednesday he has succeeded in engineering a version of the so-called swine flu virus that would be able to evade the human immune system.
The research on the 2009 H1N1 virus at a high-security lab at the University of Wisconsin, Madison has not yet been published, but was first made public July 1 by the Independent newspaper in London.
The article described virologist Yoshihiro Kawaoka, as "controversial" and said "some scientists who are aware of (the experiment) are horrified."
Kawaoka confirmed to AFP that he has been able to make changes in a particular protein that would enable the 2009 H1N1 virus to escape immune protection.
"Through selection of immune escape viruses in the laboratory under appropriate containment conditions, we were able to identify the key regions would enable 2009 H1N1 viruses to escape immunity," he said in an email.
However, he described the Independent's story—which called his research "provocative" because it sought to create a deadly flu from which humans could not escape—as "sensational."
"It is unfortunate that online news outlets choose to manipulate the message in this way to attract readers, with sensational headlines, especially in regard to science and public health matters," he said.
Kawaoka said the reason for the research was to find out how the flu virus might mutate in nature and help scientists devise better vaccines against it.
He also said he has presented his initial findings to a World Health Organization committee and it "was well received."
Controversy erupted in 2011 and 2012 over research on the H5N1 bird flu, after a Dutch and a US team of scientists each found ways to engineer a virus that could pass easily among mammals.
Concerns were raised over the potential to create a deadly pandemic like the Spanish flu of 1918-1919 that killed 50 million people.
A key worry was that bioterrorists could find a way to recreate and release such a virus, or that it could accidently escape from a research lab.
Scientists stopped their work for a time but the details of the experiments were eventually published in major scientific journals.

Sunday, April 6, 2014

In US, vaccine denial goes mainstream

AFP
People receive a free meningitis vaccine in April 2013 in Hollywood, California
Washington (AFP) - Kathleen Wiederman is not staunchly against vaccines. She simply believes it is better for her child to naturally battle an illness than to be vaccinated against it.
"Doctors don't know everything," said the 42-year-old recruiter, who prefers alternative medicine and gave birth at her home in the well-heeled Virginia suburbs without the aid of a pain-killing epidural.
At first, she and her husband agreed on the matter, but when their marriage ended, he pushed for their daughter to get some of her recommended vaccines and Wiederman relented.
Now her daughter is five and has had a handful of shots, including against chicken pox and measles, but not polio.
And if her child gets sick?
"Then we treat it however you need to treat it and work through it," she told AFP.
Wiederman, who has a law degree, is among a growing number of Americans who oppose vaccines, raising concerns about a resurgence in contagious diseases like measles and whooping cough.
Vaccine hesitancy is increasingly common, and not only when it comes to infant and childhood immunizations, experts say.
Two in three working age adults refuse to get the annual flu vaccine and the same proportion of parents decline the human papillomavirus (HPV) vaccine for young adolescents, according to the US Centers for Disease Control and Prevention.
"The people we are concerned about are the people who are hesitant. The general demographic is well-educated and upper middle class," said Barry Bloom, a professor of medicine at Harvard University.
"I think they are on the rise everywhere."
In recent years, reports linking vaccines to autism have been debunked, but fears of adverse events -- which experts say are rare -- have proven difficult to erase.
Some parents are troubled by the increasing number of vaccines children are given, which have risen from seven in 1985 to 14 today, a result of medical advances, according to the Centers for Disease Control and Prevention.
"I was stunned by the number of vaccines," said Alina Scott, a 37-year-old project manager and mother of a two-year-old son.
Scott said she began reading everything she could find on the topic, even before her child was born, and decided that vaccines were not for them.
"This lasted until about a year ago, when I just felt like I wasn't finding any new information. It's like I hit the end of Internet," she said. "I don't think we will be vaccinating any time soon."
- Religious exemptions -
Nearly all US states require a standard list of immunizations before children can enter school, but they allow religious exemptions for vaccines. Some allow parents to opt out for personal reasons.
Some measles outbreaks in recent years, including in the Orthodox Jewish community in New York City, have been linked to parents refusing vaccines.
"Today you are allowed to have philosophical reasons not to vaccinate and I think that is crazy," said Anne Gershon, director of the Division of Pediatric Infectious Disease at Columbia University Medical Center.
"The reason is that it hurts many people. It is not just your child."
Some young people cannot get vaccines, including those with cancer or immune diseases, and very young infants are vulnerable to pertussis, or whooping cough, until the age of two months when they can get begin to get doses of the vaccine.
Particularly with measles, one of the most contagious diseases, outbreaks will occur unless 94 percent or more of the population is vaccinated, according to Bloom.
Nationwide, vaccination rates among US kindergarteners have stayed high -- near 95 percent.
But a 2011 poll in the journal Pediatrics found that one in 10 parents did not stick to the recommended schedule of vaccines for their child, and a quarter of parents had doubts about vaccine safety.
The United States typically sees about 60 cases of measles per year.
"We don't have a crisis, but nonetheless the trend is going up and the number of immunizations is going down," said Bloom.
- Flu shots, cancer vaccines -
Another trend is resistance to vaccines like the annual flu shot, experts say.
The CDC said in February that two-thirds of adults aged 18 to 65 had not had their seasonal shot, and that hospitalizations in this age group had doubled over last year. Deaths from flu complications were also far higher than usual.
Doctors are also surprised at how many decline the three-dose shot to prevent HPV, a sexually transmitted infection which can lead to cervical cancer in women and cancers of the head, neck, penis and anus in men.
The vaccine is recommended for school age boys and girls before they become sexually active, and can be given as early as age nine.
Just one in three women aged 19 to 26 had been vaccinated in 2012, and just 2.3 percent of men, the CDC has reported.
"I think for physicians, the idea that vaccines could prevent cancers seems phenomenal," said Anne Schuchat, Assistant Surgeon General and director of the National Center for Immunization and Respiratory Diseases.
"It has been a surprise it has not been going like hotcakes."
When it comes to how to communicate the benefits of vaccines to a skeptical public, experts are stumped.
In Bloom's view, vaccines have fallen victim to their own success.
"If they have never seen a kid blinded from measles, or mentally retarded from pertussis, it is very hard in this wonderful, happy, affluent world of kindergartens and first and second grades to see that there is a problem that vaccines are preventing."
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Tuesday, March 25, 2014

Sick Again? Why Some Colds Won't Go Away


Some people get back-to-back colds, infected by a new virus

March 24, 2014 7:02 p.m. ET
Rhinoviruses are the main cause of the common cold. Science Picture Co./Corbis
About a month ago Sharon Gilbert was hit with a runny nose, sore throat and a cough. The whole snotty works.
A few weeks later she thought she had recovered. Then her husband Derek got sick, and bam. "Suddenly I started getting all the symptoms [again] and it was worse," said Ms. Gilbert, a 61-year-old writer in Charleston, Ill.
In the winter that seems to have no end in many parts of the country, people like Ms. Gilbert have been plagued with the seemingly everlasting cold.
That's partly because the common cold can last longer than many people think—up to two weeks for the principal symptoms and perhaps weeks more for a cough that lingers even after the virus has been cleared away. There's also the possibility of secondary infections such as bacterial sinusitis.
And some patients might get back-to-back colds, doctors say. It isn't likely people will be reinfected with the same virus because the body builds some immunity to it. But people can pick up another of the more than 200 known viruses that can cause the common cold, some of which are worse than others.

The Cold Facts

  • Adults on average get two to five colds a year, mostly between September and May. Young children can get as many as seven to 10 colds.
  • More than 200 different viruses cause colds, and scientists continue to discover new ones.
  • Colds are most contagious about two days before symptoms start and in the early stages of illness.
  • The average cold lasts two to 14 days. Coughs can linger up to six weeks.
  • Exercise, reducing stress, getting good sleep and hand hygiene can help prevent getting a cold.
Sources: National Institute of Allergy and Infectious Diseases; Common Cold Centre (Cardiff University); CDC.
"When you hear people who have the cold that 'won't go away,' those are typically back-to-back infections of which we see a lot of in the cold weather when people are cohorting together," said Darilyn Moyer, a physician at Temple University Hospital and chairwoman-elect of the American College of Physicians Board of Governors.
Influenza may get all the attention, but the common cold is the leading cause of doctor visits, according to the National Institutes of Health. Each year, people in the U.S. get about one billion colds, and 22 million school days are lost to the stubborn viruses.
Experts say adults on average get two to five colds a year; school children can get as many as seven to 10. The elderly tend to get infected less because they've built up immunity to many viruses. And adults who live or work with young children come down with more colds.
Don't I know it. For more than a month now my family seems to be playing a game of pass-the-nasty-cold. My husband had a cold and lingering cough for weeks, which we suspect he gave to our infant. Finally I succumbed.
We blamed the purveyor of all germs, our kindergartner. Just as we were all recovering, the infant started day care and brought home a virus and we're all on round two of apparently a different cold.
Experts say it's possible that the carrier of germs—in this case our kindergartner—can infect others without having symptoms himself.
"At any given moment if we were to swab you…we'd probably come up with five different rhinoviruses sitting in your nose but you're not sick," said Ann Palmenberg, a researcher at the Institute of Molecular Virology at the University of Wisconsin-Madison. Rhinovirus is the most common viral cause of the common cold, accounting for 30% to 50% of adult colds, and there are more than 150 strains of it.
To get infected, the so-called ICAM receptors, which the rhinovirus attaches to in order to enter the nasal cells, need to be open, Dr. Palmenberg said.
"Rhinos are out there all the time, it's just a question of when you are susceptible," she said. Factors such as stress, lack of sleep and people's overall health can make them more likely to get infected. More than 150 strains or genotypes of the rhinovirus have been identified and researchers believe there are probably many more.
Rhinovirus replicates best in the relatively lower body temperatures of the upper respiratory area, such as the nasal passages, sinuses and throat.
Other viruses, such as the less-common adenovirus, can replicate and attach to receptors in the upper and lower respiratory tracts, causing a more serious illness.
Other viruses—including the coronavirus, respiratory syncytial virus and enterovirus—have also been identified as causing cold symptoms. "The most confounding thing of all is that we still haven't identified the cause of 20% to 30% of adult common colds," said Anthony Fauci, director of the National Institute of Allergy and Infectious Diseases, part of the National Institutes of Health.
Sometimes a cold that never seems to end could be a sign of something more serious. A cold may result in a sinus infection, bronchitis or pneumonia. And cold symptoms are at times confused with seasonal allergies.
A usually dry cough that lingers after a cold is typically due to bronchial hyperreactivity or tracheal inflammation, doctors say. "After you go through an infection in your respiratory system, you can almost have a transient form of asthma where your bronchial tubes are very highly reactive and very irritated and inflamed," said Dr. Moyer, of Temple University Hospital.
A review of various studies, published last year in the journal Annals of Family Medicine, found that coughs on average last about 18 days. The report also said a survey of nearly 500 people found that most participants expected a cough should disappear in about a week and believed antibiotics from their doctor would help them. (A big no-no!)
Some experts believe having one cold virus and a weakened immune system could make catching another virus easier. Because the epithelial linings in the nose are weakened when you have a cold, the broken down mucus-membrane barrier may be more prone to picking up another virus.
But others suggest that proteins such as interferons, which are secreted during a cold to help fight the virus, may also boost resistance to getting infected by a second virus, according to Dr. Fauci, of the NIH.
What can a person do to prevent or shorten a cold? Nearly everyone knows someone who swears by taking echinacea or zinc or downing packs of vitamin C.
But doctors say the evidence isn't conclusive that any of these remedies helps. Some research indicates that exercise and meditation could help prevent colds.
The good news is spring is here, at least officially, so the worst of the winter cold season should be over. Come summer, however, a new batch of viruses emerge and you might find yourself saying hello to the pesky summer cold.

Saturday, March 15, 2014

Stomach virus closes Alexandria school after 230 get sick

http://wtop.com/

Friday - 3/14/2014, 12:02pm  ET
virus375.jpg
The sign posted on the door of John Adams Elementary School in Alexandria. (WTOP/Jamie Forzato)

WASHINGTON -- About 230 students and faculty at an Alexandria elementary school are sick with a stomach illness, forcing the school to close on Friday, March 14.
In the past two days, nearly 200 students and more than 30 staff at John Adams Elementary School called out sick and exhibited symptoms of nausea, vomiting and diarrhea, school officials say.
Chief Administrative Officer Tammy Ignacio for Alexandria City Public Schools spoke with members of the news media Friday and says the illness was first detected in the fourth grade wing of the school.
On Wednesday night, that area of the school was quarantined and cleaned but the virus still spread to other wings of the school by Thursday, according to Ignacio. After making the call to close school Friday, she says the facility will be cleaned "top to bottom" with a substance that consists of 10 percent bleach and the cleaning process will entail "the walls, the ceilings, the toys, the desks, pretty much every aspect of the building."
The cleaning will be done in three steps.
"So if you miss anything the first time, you hit it the second and the third," she says. "We're also looking into a fogging process, which is very safe but it will kill the virus."
School staff grew concerned Thursday when more than 100 students were absent from school and Ignacio says that number is "highly unusual." In addition to those out sick, children and staff were in and out of the nurse's office with vomiting and diarrhea. By lunch, the school determined this was a situation to get a handle on and a letter was sent home to parents.
John Adams Elementary consists of 820 students and 131 faculty on staff and is a pre-Kindergarten through fifth grade program.
The school is closed Friday so the facility and all shared surfaces can be cleaned and disinfected throughout the weekend. School is scheduled to resume on Monday, March 17.
The school is working in collaboration with the Alexandria Health Department to identify cases and prevent the further outbreak of this type of illness which is highly contagious and spread through contact with an infected person or through contact with contaminated food or objects. It is also known to thrive on surfaces such as doorknobs and lockers.
Many viruses and some bacteria can cause stomach illness or gastroenteritis, according to the Alexandria Health Department. The most likely cause at John Adams Elementary is a virus called norovirus.
Symptoms usually improve after two days but there is no medicine or treatment to shorten the illness. However, there are actions parents of students and the community can take to prevent additional people from catching the bug including:
  • Make sure a student washes his or her hands frequently and thoroughly with soap and warm water for 20 seconds.
  • If a student develops vomiting or diarrhea, keep the child at home for 24 hours after the symptoms stop before sending the student back to school.
  • Inform school officials if a student is ill with the symptoms.
  • Watch for signs of dehydration. If an ill child is unable to drink fluids, call a doctor immediately if there are any concerns.
Ignacio says she is "absolutely" optimistic school will be open on Monday but if kids develop symptoms over the weekend and it's Monday, she adds, "Please, please keep them home."
In addition to Friday, students at John Adams have missed nine days of school due to weather conditions during the 2013-14 school year.

Monday, February 10, 2014

NY Mall Warning: Shoppers Possibly Exposed to Measles

 http://www.nbcnewyork.com/

Monday, Feb 10, 2014  |  Updated 12:46 PM EST

Shoppers at a New York mall, particularly those at an AT&T store and a Best Buy, were possibly exposed to measles, a county health department warned Friday.
A case of measles has been identified in Rockland County, and anyone at the Palisades Center Mall on Sunday between 11 a.m. and 1 p.m. could have been exposed, the county Department of Health said. 
The health department said people who shopped on the first floor of the mall and at those two electronics stores are at the greatest risk of exposure.
It's a painful, contagious disease that many people mistake for the common cold. 
Despite news of the measles case, the parking lot at Palisades Mall was packed Friday night. One shopper who contracted it 25 years ago called it "scary."
"No one should have to go through it," said Leanne O'Brien of Newburgh.
Bruce Pratt of Munsie also had the measles decades ago and still remembers the pain it caused. 
"I had a cold, rash on my stomach and little spots, and you cough a lot," he said. 
Babies under 6 months old, pregnant women and those with immune system problems may be at risk. Anyone who has not had a measles vaccination and who was shopping at the mall during those times should also contact a doctor, the health department said.
People who have had two doses of measles, mumps and rubella vaccine are not at risk of contracting measles, authorities said. Most New Yorkers have been vaccinated, the health department said.
Symptoms of measles include fever and rash but many people who contract it may think it may dismiss the warning signs. 
"They may just think they have a cold, so they may have not broken out with the rash, and they don't know they have it and can expose a lot of people," said Dr. Len Horovitz at Lenox Hill Hospital. 
Anyone who suspects they may have been exposed and have symptoms should call their physician before seeking care so that others are not exposed in a waiting room, the health department said.
- Brynn Gingras contributed to this report.

Sunday, February 2, 2014

Antibiotics losing the fight against deadly bacteria

Scientists warn of a global public health concern as overuse of drugs reduces their effectiveness

Our last line of defence against bacterial infections is fast becoming weakened by a growing number of deadly strains that are resistant to even the strongest antibiotics, according to new figures given to The Independent on Sunday by the Health Protection Agency (HPA).
The disturbing statistics reveal an explosion in cases of super-resistant strains of bacteria such as E.coli and Klebsiella pneumoniae, a cause of pneumonia and urinary tract infections, in less than five years.
Until 2008, there were fewer than five cases a year in the UK of bugs resistant to carbapenem, our most effective intravenous (IV) antibiotic. New statistics reveal how there have been 386 cases already this year, in what the HPA has called a "global public health concern". Doctors are particularly concerned because carbapenems are often the last hope for hospital patients suffering from pneumonia and blood infections that other antibiotics have failed to treat. Such cases were unknown in the UK before 2003.
Years of over-prescribing antibiotics, bought over the counter in some countries, and their intensive use in animals, enabling resistant bacteria to enter the food chain, are among the factors behind the global spread. According to the latest figures from the World Health Organisation, some 25,000 people a year die of antibiotic-resistant infections in the European Union.
In a statement issued during a WHO conference in Baku, Azerbaijan, last week, the organisation warned that doctors and scientists throughout Europe fear the "reckless use of antibiotics" risks a "return to a pre-antibiotic era where simple infections do not respond to treatment, and routine operations and interventions become life-threatening."
More than 50 countries signed up to a European action plan on antibiotic resistance, unveiled at the conference, which includes recommendations for greater surveillance of antibiotic resistance, stricter controls over the use of antibiotics, and improved infection control in hospitals and clinics.
"We know that now is the time to act. Antibiotic resistance is reaching unprecedented levels, and new antibiotics are not going to arrive quickly enough," said Zsuzsanna Jakab, the WHO Regional Director for Europe. "There are now superbugs that do not respond to any drug," she added.
Dr Alan Johnson, a clinical scientist and expert in antibiotic resistance at the HPA, warned delegates at its annual conference last week that the problem is making some infections harder and in some, cases, virtually impossible, to treat.
Speaking to the IoS, he said: "We've had a problem of antibiotic resistance for as long as we've had antibiotics. The big problem at the moment is, for certain types of bacteria, we are seeing problems of resistance emerging and we don't actually have any new antibiotics in the pipeline to deal with them."
The rise is partially due to certain epidemic strains of bacteria that are well adapted to spreading between people, with the added complication that the genes encoding resistance in bacteria can move between different types, explained Dr Johnson.
People are largely unaware of the dangers of taking antibiotics, he added. "There's been a perception among doctors and the public that antibiotics are quite harmless. What we now know is that if, as an individual, you take a course of antibiotics you will almost certainly end up being colonised by antibiotic-resistant bacteria in the gut, because the bacteria mutate so rapidly. Now they may disappear and not be a problem, or they may sit there and next time you get an infection it could be due to the resistance that has persisted."
And one of the country's leading experts warned last night that Britain is very close to seeing the first cases of infections that are resistant to all antibiotics.
Professor Tim Walsh, an expert in antibiotic resistance at Cardiff University, said: "We are very close to having pan-resistant bacteria in this country. The consequence of this is that we are more or less back to the pre-antibiotic days of the 1920s, so these drugs that we've relied on for so long and taken for granted have now become obsolete because we've become complacent."
A rise in deaths will almost certainly result, claimed Professor Walsh, with people that have weakened immune systems among those at greatest risk.
Little is known about the toll on Britons, with the HPA admitting that it does not have "the mortality statistics for this resistance in the UK". It is calling on doctors to exercise caution when using antibiotics, and for hospitals to track cases of antibiotic resistance and stop the spread of the bacteria between patients.

Wednesday, January 15, 2014

Many younger U.S. adults skipping flu shots: report



(Reuters) - Just over a third of U.S. adults ages 18 to 65 got the flu shot during the 2012-2013 flu season, according to an analysis released on Tuesday, and if that trend holds for the current flu season, many adults may be at risk.
According to the U.S. Centers for Disease Control and Prevention, the most prevalent flu strain this season is H1N1 - the same strain that caused the 2009 pandemic and afflicts otherwise healthy children and young adults.
Flu is now widespread in 35 states, according to the CDC. Rates are particularly high in 13 states, mostly in the South and Southwest: Alabama, Arkansas, Indiana, Kansas, Louisiana, Mississippi, Missouri, Nevada, New Mexico, North Carolina, Oklahoma, Texas and Utah.
"The trend of low vaccination rates among younger adults is particularly troubling this year, when they are more at risk than usual for the effects of the H1N1 strain of flu that's circulating," said Jeffrey Levi, executive director of Trust for America's Health, the nonprofit health advocacy group that released the latest findings.
The analysis found that overall, 45 percent of all Americans got a flu shot during the 2012-13 season, the most recent period for which full season data are available. That was up slightly from 41.8 percent in the 2011-12 season.
But among U.S. adults aged 18-64, only 35.7 percent got a flu shot during the 2012-2013 flu season. That compared with 56.6 percent of children age 6 months to 17 years, and 66.2 percent of seniors 65 and older who were vaccinated during 2012-2013.
Among U.S. states, vaccination rates were highest last season in Massachusetts at 57.5 percent, and lowest in Florida at 34.1 percent. Only 12 states had vaccination rates of 50 percent or higher: Delaware, Hawaii, Iowa, Maine, Maryland, Massachusetts, Minnesota, Nebraska, North Carolina, Rhode Island, South Dakota and Tennessee.
The CDC recommends all American 6 months and older get vaccinated each year.
(Reporting by Julie Steenhuysen; Editing by Dan Grebler)

Swine flu deaths rise to 17 in Bay Area

Henry K. Lee
Updated 5:12 pm, Tuesday, January 14, 2014
(01-14) 17:11 PST SAN FRANCISCO -- The number of reported deaths linked to swine flu in the Bay Area rose to 17 Tuesday after public health officials reported new deaths in Solano and San Mateo counties.
 
There have been four flu deaths in Santa Clara County, three each in Alameda and San Mateo counties, two each in Marin and Sonoma counties, and one each in San Francisco, Solano and Contra Costa counties.
Many of the deaths are attributable to a strain of influenza that has targeted the relatively young and healthy. One victim in Sonoma County, Matthew Walker, was only 23.
The vaccine is well-matched to this year's flu season and protects against all strains of influenza that have been identified in patients. The primary strain circulating this year is Type A, subtype H1N1 - also known as the "swine flu," which caused a global outbreak in 2009.
People age 65 and older appear to have some protection against H1N1, which tends to strike younger adults - even those who are otherwise healthy - harder than most influenza strains. Symptoms of the flu include high fever, body aches and a sudden onset of illness.
Even after people are vaccinated, it's important they take other steps like regularly washing their hands or covering coughs and sneezes to keep themselves, and others, healthy, public health officials say. Those who are sick should not go to work or school.
The flu vaccine takes about two weeks to become fully effective, so public health experts recommend people get it now if they haven't already. To get the vaccine, call your health care provider, or go to http://flushot.healthmap.org to find the nearest supplier.

 SFGate

H5N1 isolated from Alberta nurse who died will be studied


Victim believed to have contracted bird flu virus during trip to China in December

The Canadian Press Posted: Jan 14, 2014 3:02 PM MT Last Updated: Jan 14, 2014 5:18 PM MT
Isolating the virus allows the national lab to do research on this strain of H5N1. (CBC)
Isolating the virus allows the national lab to do research on this strain of H5N1. (CBC)
Canada's National Microbiology Laboratory has isolated live H5N1 virus from respiratory specimens taken from an Alberta woman who died recently from infection with that bird flu virus.
The Winnipeg-based lab is working in collaboration with Alberta's provincial laboratory to sequence the entire genome of the virus, which the woman is believed to have contracted during a three-week trip to China in December.
The woman was unwell on her return trip on Dec. 27, was hospitalized Jan. 1 and died Jan. 3.
This is the first time an H5N1 infection has been detected in North America.
Isolating the virus allows the national lab to do research on this H5N1.
In an emailed response to questions, officials at the Winnipeg lab say copies of the virus will be shared with the U.S. Centers for Disease Control, which is part of the World Health Organization's network of influenza reference laboratories.
They also say the full genetic blueprint of the virus will be entered into GISAID, an online influenza database accessible to flu researchers from around the globe.
Canadian and Alberta health officials have been working with authorities from China and from the WHO to try to figure out how the Alberta woman became infected with H5N1.
The woman was a nurse from Red Deer who was originally from China. She travelled there with her mother. The pair spent their entire vacation in Beijing and reportedly did not visit poultry markets or have exposure to poultry while there.
While H5N1 is considered to be endemic in China, there have been few recent reports of it there and none from Beijing.
That fact, along with the woman's apparent lack of exposure to poultry, leaves authorities puzzled as to how she was exposed.

Saturday, January 11, 2014

Outbreak of 'nightmare bacteria' in Illinois stirs worry



The largest outbreak to date of one strain of what authorities have called "nightmare bacteria" is adding to concerns about the spread of such drug-resistant bugs.
The outbreak, centered on a hospital in a Chicago suburb, has infected 44 people in Illinois over the past year, the Centers for Disease Control and Prevention said. The bug, known as carbapenem-resistant enterobacteriaceae, bears a rare enzyme that breaks down antibiotics.
"This is a huge cluster," said Alex Kallen, a medical officer with the CDC and supervisor for the Illinois outbreak investigation, noting that only 97 cases of the infection have been reported to the agency since 2009.
The superbug, which typically lives in the intestines and is part of a large family of bacteria, can be spread via fecal matter. It isn't typically transmitted by casual contact outside hospitals.

Alberta woman who died of H5N1 was in her 20s

Infectious disease experts search for clues in death of health-care worker

CBC News Posted: Jan 09, 2014 11:33 AM ET Last Updated: Jan 09, 2014 6:10 PM ET
deaths reported to the WHO
The Alberta woman who died of H5N1 bird flu was in her 20s and a health-care worker at Red Deer Hospital.
More details emerged Thursday about the isolated, fatal case of H5N1, or avian influenza, that health officials announced yesterday. It was the first reported death from avian flu in North America.
The infected woman, an Alberta resident who recently travelled to Beijing, China, died Jan. 3.
The World Health Organization is supporting the work of investigators in Canada and China who are trying to piece together how and where she was exposed to the virus.
Dr. Wenqing Zhang, head of the WHO's global influenza program, said Thursday the organization wants to get the big picture of the case.
 Zhang told CBC News from Geneva that two main questions need to be answered about the woman's death in Alberta:
  • Where did she visit?
  • How did the exposure happen?
"At the moment, we know that the woman didn't visit a poultry farm or a poultry market, but that does not necessarily mean [that] exposure was excluded," Zhang said.
The woman was in her 20s and was a health-care worker at Red Deer Regional Hospital.
A second focus for the WHO is on close contacts, Zhang said. The goal is to understand whether any human-to-human transmission occurred.
Dr. Michael Gardam, an infectious disease consultant with Toronto's University Health Network who's not with the WHO, says it's "odd" for humans to get infected with H5N1 from a non-poultry source.
"Almost all of the cases that we've heard about going back to the 1990s, there's been direct contact with poultry," said Gardam. "So if this person hasn't visited farms and hasn't been around birds, that's very odd. I imagine they'll be doing a lot of sleuthing in China to figure out what happened."
China Bird Flu
Almost all H5N1 cases so far involved direct contact with poultry but that doesn't seem to be the case so far for Alberta's. ( Associated Press)
There's no evidence H5N1 can spread easily between people. When it has, there has been sustained contact, such as between patients and family members, or patients and health-care workers.
The window for any further transmission between people is closing, since normally people would get sick with symptoms two to eight days after exposure to the virus, Zhang said. The woman first showed symptoms of the flu on a Dec. 27 flight.
Part of the investigation involves interviewing people in Beijing and retracing their steps," said Andrew Potter, a microbiologist and director of the Vaccine and Infectious Disease Organization at the University of Saskatchewan in Saskatoon.
"If you were to ask me what was I doing three, four weeks ago, I would have a very tough time telling you and I'm alive," Potter said in an interview. "Trying to trace it for somebody who is deceased is a very difficult procedure. The fact that it was in another country makes it even more so."
The patient's health, immunity, interactions with chickens, migratory birds or their droppings are also part of the equation for investigators, Potter said. Another is whether tests show if the patients' relatives who did not get sick mounted an immune response against H5N1.
The H5N1 virus is on WHO's radar as its experts look for any potential signs its gaining the ability to spread rapidly between people.

The flu season, explained in plain language


Today in Canada we are in the midst of a “normal” flu season. That is the recurring message from public health officials across the country.
Bear in mind, though, that normal is deadly: Millions of Canadians will be sickened and thousands will die, courtesy of the annual winter visitor.
This paradox helps underscore one of the most difficult challenges in public health: Communicating risk, particularly when it comes to the flu.

More Related to this Story

Influenza has been around for time immemorial but the virus is constantly mutating, making it a moving target.
Yet the flu chronicles, passed down through the generations and at lightning speed on social media, are also imbued with larger-than-life mythology and a great deal of misunderstanding.
So here’s a plain-language version of what you need to know to deal with the outbreak of influenza that has come (or will soon come) to a community near you.
The flu is a infectious respiratory disease that is highly contagious. The virus jumps from pigs and birds to humans, as we are seeing with the current emergence of bird flus H5N1 and H7N9. But these strains only become a real worry when they start spreading among humans. Once a new strain is established in humans, it mutates to remain infectious, making the flu a wily opponent.
At greatest risk of harm from influenza are those with compromised immune systems: The very young, pregnant women, the frail elderly and people with chronic health conditions like asthma, heart disease and COPD.
The virus (or viruses, to be more precise) travels around the world, and across the country, in a fairly predictable fashion: In the case of Canada, the bug moves from west to east, roughly between November and March, with the number of cases rising and falling roughly along the shape of a bell curve.
We are now approaching the peak of flu season, which is why it may seem like everyone has the flu. In reality, between 5 and 20 per cent of the population will contract the flu in any given year.
There are also many other bugs kicking around, especially in winter. “The flu” has become a catch-all term, leaving us confused about the fact that influenza is a very specific respiratory disease.
This year’s most common flu strain is H1N1. Many will recall that being a “pandemic” strain back in 2009 and that seems to have created extra worry. “Pandemic” is the term given to a completely new strain in humans, meaning a lot more people are susceptible to the virus.
H1N1 is now considered a seasonal strain. Lots of people have been exposed or vaccinated, so they have full or partial immunity. But lots of people will still get sick and some will die. That is “normal.”
Somewhere between 4,000 and 8,000 Canadians a year die of influenza and its related complications, according to the Public Health Agency of Canada. Those numbers are controversial because they are estimates.
In fact, influenza, by its very nature, requires a lot of guesswork.
Take the flu vaccine. Public health officials have to guess, about six months in advance, what strains will be circulating to create vaccines to protect against them. This year they did well. The flu shot protects against A/H1N1 A/H3N2 and B/Massachusetts, and those are the circulating strains. In fact, 90 per cent of cases seen so far this year in Canada have been H1N1.
The distinguishing feature of H1N1 is that it hits young adults hard. It is not more deadly than H3N2, which ruled the roost last year, but does not affect the usual demographic – the elderly. The inordinate amount of attention being paid to H1N1 by the media reflects the sad reality that we take deaths of seniors for granted.
There is also a fair bit of controversy over how well the vaccine works. The honest answer is: It depends. It depends on the characteristics of the individual, and the match between the circulating strain and the vaccine. But the bottom line is that getting a flu shot offers more protection than not getting one. And don’t buy into all the scare-mongering: The flu vaccine is relatively safe, and certainly a lot less harmful than the flu.
We can’t prevent the annual appearance, nor predict how deadly it will be, but we can lessen its impact with simple measures like hand-washing and vaccination.
We can also arm ourselves with knowledge, which is the best tool we have to assuage fears and keep risks in perspective.

First Human Avian Influenza A (H5N1) Virus Infection Reported in Americas


January 8, 2014 – Canada has reported the first case of human infection with avian influenza A (H5N1) virus ever detected in the Americas. The case occurred in a traveler who had recently returned from China. H5N1 virus infections are rare and these viruses do not spread easily from person to person. Most of the 648 human cases of H5N1 infections that have been detected since 2003 have occurred in people with direct or close contact with poultry. The Centers for Disease Control and Prevention (CDC) considers that the health risk to people in the Americas posed by the detection of this one case is very low. CDC is not recommending that the public take any special actions regarding H5N1 virus in response to this case. For people traveling to China, CDC recommends that people take the same protective actions against H5N1 as recommended to protect against H7N9 or other avian influenza A viruses. This information is available on the CDC website at Travelers Health: Avian Flu (Bird Flu).
According to Canadian health officials, the patient, who died on January 3, 2014, recently traveled to Beijing, China, where avian influenza A H5N1 is endemic among poultry. This is the first detected case of human infection with avian influenza A H5N1 virus in North or South America. It also is the first case of H5N1 infection ever imported by a traveler into a country where this virus is not present in poultry. No such H5N1 viruses have been detected in people or in animals in the United States.
While human infection is rare, it often results in serious illness with very high mortality (60%). CDC has recommended enhanced surveillance measures to detect possible cases of H5N1 in this country since 2003. In 2007, “novel influenza A infections” such as H5N1, became nationally notifiable diseases in the United States. Novel influenza A virus infections include all human infections with influenza A viruses that are different from currently circulating human seasonal influenza H1 and H3 viruses. Rapid reporting of human infections with novel influenza A viruses facilitates prompt detection and characterization of influenza A viruses and accelerates the implementation of effective public health responses.
While the current risk from H5N1 viruses is very low and CDC believes it unlikely that cases of H5N1 have occurred in the United States, CDC will send out a reminder to clinicians in this country about when and how to test for H5N1 infection. The recommendations for testing for H5N1 are similar to those for H7N9 and include recent travel (within 10 days) to a country with H5N1 virus infections in birds or people. The guidance for H7N9 is posted on the CDC website at Human Infections with Novel Influenza A (H7N9) Viruses.
According to CDC, more concerning for Americans right now is seasonal flu, which is widespread in much of the country. The agency urges people who have not gotten their seasonal flu vaccine this season to get vaccinated now. A seasonal vaccine will protect you against seasonal flu viruses.
As mentioned previously, avian influenza A H5N1 is endemic in poultry in China. Since 2003, 45 cases of human infection with H5N1 have been reported in China and 30 (67%) have died. Affected persons have ranged in age from 2 years to 62 years, with an average age of 26 years. Most of the reported cases have had poultry exposure.
The detection of one isolated case of H5N1 virus infection in a returned traveler does not change the current risk assessment for an H5N1 pandemic. A pandemic would only result if the H5N1 virus were to gain the ability to spread efficiently from person-to-person and there is no indication that this has occurred.
CDC is in close contact with Canadian public health partners and has offered laboratory and other support as needed. The agency will continue to monitor this situation closely and work with public health partners to rapidly test any incoming specimens and advise local and state authorities regarding control measures if needed. Long-term preparedness measures against H5N1 include the existence of a stockpile of H5N1 vaccine in the Strategic National Stockpile.
Background
H5N1 is a virus that occurs mainly in birds, is highly contagious among birds, and can be deadly to them, especially domestic poultry. Since December 2003, highly pathogenic avian influenza A (H5N1) virus infections in birds have been reported in Asia, Africa, and Europe. H5N1 viruses are considered endemic (ever present) in poultry in at least six countries (alphabetically: Bangladesh, China, Egypt, India, Indonesia and Vietnam) with sporadic detection in wild birds and poultry outbreaks occurring in other countries. The virus also is circulating widely in other countries in those regions. From 2003 through December 10, 2013, 648 laboratory-confirmed human cases with H5N1 virus infection have been officially reported to WHO from 15 countries. Of these cases, 384 died (60%). At the current time, there is no ongoing transmission of any avian influenza A viruses in humans, including H5N1 viruses.
However, the H5N1 epizootic poses an important public health threat since influenza viruses evolve and swap genes frequently. If H5N1 viruses were to gain the ability for efficient and sustained transmission among humans, an influenza pandemic could result, with potentially high rates of illness and death worldwide. The Centers for Disease Control and Prevention (CDC), the World Health Organization (WHO) and Food and Agriculture Organization of the United Nations (FAO) conduct routine surveillance to monitor influenza viruses, including H5N1 viruses, for changes that may have implications for animal and public health.
More information on H5N1 is available at Highly Pathogenic Avian Influenza A (H5N1) Virus.

Smartphone apps multiply, but so do germs


AFP
A woman looks at an Apple iPhone at one of the company's stores in Paris on December 20, 2013

A woman looks at an Apple iPhone at one of the company's stores in Paris on December 20, 2013 (AFP Photo/Patrick Kovarik)
Las Vegas (AFP) - It may be your best friend, but your smartphone is also probably teeming with germs.
As innovators descended on the Consumer Electronics Show, companies offering better sanitizing were also promoting the cause of cleanliness.
The technology show has long had a focus on health, but makers of sanitizing devices said people need to look in their pockets and purses to the microbes on their personal gadgets.
The smartphone "is always warm, stored in dark places, so bacterias are growing on your phone," said Dan Barnes, co-founder of Phonesoap, which was displaying its device which sanitizes a phone and recharges it.
Barnes said he got the idea after reading a study indicating "that mobile phones are 18 times dirtier than public bathrooms."
Barnes said his $50 device uses ultraviolet radiation which "kills the bacteria's DNA, so that they can't live on your phone anymore."
Similar devices were also seen at the huge electronics fair, including one called CleanBeats, which sanitizes, plays music and recharges two phones through a USB connection.
The CleanBeats device is based on NASA technology, and will soon hit the market with a $499 price tag, said spokesman Dennis Rocha for the California-based startup
The company website says its device produces "hydroperoxide catalytic molecules" to sanitize the surfaces of touchscreens.

Monday, January 6, 2014

Swine influenza

From Wikipedia, the free encyclopedia


Electron microscope image of the reassorted H1N1 influenza virus photographed at the CDC Influenza Laboratory. The viruses are 80–120 nanometres in diameter.[1]
 
Swine influenza, also called pig influenza, swine flu, hog flu and pig flu, is an infection caused by any one of several types of swine influenza viruses. Swine influenza virus (SIV) or swine-origin influenza virus (S-OIV) is any strain of the influenza family of viruses that is endemic in pigs.[2] As of 2009, the known SIV strains include influenza C and the subtypes of influenza A known as H1N1, H1N2, H2N1, H3N1, H3N2, and H2N3.
Swine influenza virus is common throughout pig populations worldwide. Transmission of the virus from pigs to humans is not common and does not always lead to human flu, often resulting only in the production of antibodies in the blood. If transmission does cause human flu, it is called zoonotic swine flu. People with regular exposure to pigs are at increased risk of swine flu infection.
Around the mid-20th century, identification of influenza subtypes became possible, allowing accurate diagnosis of transmission to humans. Since then, only 50 such transmissions have been confirmed. These strains of swine flu rarely pass from human to human. Symptoms of zoonotic swine flu in humans are similar to those of influenza and of influenza-like illness in general, namely chills, fever, sore throat, muscle pains, severe headache, coughing, weakness and general discomfort.
In August 2010, the World Health Organization declared the swine flu pandemic officially over.

Structure

The influenza virion is roughly spherical. It is an enveloped virus; the outer layer is a lipid membrane which is taken from the host cell in which the virus multiplies. Inserted into the lipid membrane are ‘spikes’, which are proteins – actually glycoproteins, because they consist of protein linked to sugars – known as HA (hemagglutinin) and NA (neuraminidase). These are the proteins that determine the subtype of influenza virus (A/H1N1, for example). The HA and NA are important in the immune response against the virus; antibodies (proteins made to combat infection) against these spikes may protect against infection. The NA protein is the target of the antiviral drugs Relenza and Tamiflu. Also embedded in the lipid membrane is the M2 protein, which is the target of the antiviral adamantanes amantadine and rimantadine.

Classification

Of the three genera of influenza viruses that cause human flu, two also cause influenza in pigs, with influenza A being common in pigs and influenza C being rare.[3] Influenza B has not been reported in pigs. Within influenza A and influenza C, the strains found in pigs and humans are largely distinct, although because of reassortment there have been transfers of genes among strains crossing swine, avian, and human species boundaries.

Influenza C

Influenza viruses infect both humans and pigs, but do not infect birds.[4] Transmission between pigs and humans have occurred in the past.[5] For example, influenza C caused small outbreaks of a mild form of influenza amongst children in Japan[6] and California.[6] Because of its limited host range and the lack of genetic diversity in influenza C, this form of influenza does not cause pandemics in humans.[7]

Influenza A

Swine influenza is known to be caused by influenza A subtypes H1N1,[8] H1N2,[8] H2N3,[9] H3N1,[10] and H3N2.[8] In pigs, four influenza A virus subtypes (H1N1, H1N2,H3N2 and H7N9) are the most common strains worldwide.[11] In the United States, the H1N1 subtype was exclusively prevalent among swine populations before 1998; however, since late August 1998, H3N2 subtypes have been isolated from pigs. As of 2004, H3N2 virus isolates in US swine and turkey stocks were triple reassortants, containing genes from human (HA, NA, and PB1), swine (NS, NP, and M), and avian (PB2 and PA) lineages.[12] In August 2012, the Center for Disease Control and Prevention confirmed 145 human cases (113 in Indiana, 30 in Ohio, one in Hawaii and one in Illinois) of H3N2v since July 2012.[13] The death of a 61-year-old Madison County, Ohio woman is the first in the nation associated with a new swine flu strain. She contracted the illness after having contact with hogs at the Ross County Fair.[14]

Surveillance

Although there is no formal national surveillance system in the United States to determine what viruses are circulating in pigs,[15] an informal surveillance network in the United States is part of a world surveillance network.[16]

History

Swine influenza was first proposed to be a disease related to human flu during the 1918 flu pandemic, when pigs became ill at the same time as humans.[17] The first identification of an influenza virus as a cause of disease in pigs occurred about ten years later, in 1930.[18] For the following 60 years, swine influenza strains were almost exclusively H1N1. Then, between 1997 and 2002, new strains of three different subtypes and five different genotypes emerged as causes of influenza among pigs in North America. In 1997–1998, H3N2 strains emerged. These strains, which include genes derived by reassortment from human, swine and avian viruses, have become a major cause of swine influenza in North America. Reassortment between H1N1 and H3N2 produced H1N2. In 1999 in Canada, a strain of H4N6 crossed the species barrier from birds to pigs, but was contained on a single farm.[18]
The H1N1 form of swine flu is one of the descendants of the strain that caused the 1918 flu pandemic.[19][20] As well as persisting in pigs, the descendants of the 1918 virus have also circulated in humans through the 20th century, contributing to the normal seasonal epidemics of influenza.[20] However, direct transmission from pigs to humans is rare, with only 12 recorded cases in the U.S. since 2005.[21] Nevertheless, the retention of influenza strains in pigs after these strains have disappeared from the human population might make pigs a reservoir where influenza viruses could persist, later emerging to reinfect humans once human immunity to these strains has waned.[22]
Swine flu has been reported numerous times as a zoonosis in humans, usually with limited distribution, rarely with a widespread distribution. Outbreaks in swine are common and cause significant economic losses in industry, primarily by causing stunting and extended time to market. For example, this disease costs the British meat industry about £65 million every year.[23]

1918 pandemic in human

The 1918 flu pandemic in humans was associated with H1N1 and influenza appearing in pigs;[20] this may reflect a zoonosis either from swine to humans, or from humans to swine. Although it is not certain in which direction the virus was transferred, some evidence suggests, in this case, pigs caught the disease from humans.[17] For instance, swine influenza was only noted as a new disease of pigs in 1918, after the first large outbreaks of influenza amongst people.[17] Although a recent phylogenetic analysis of more recent strains of influenza in humans, birds, and swine suggests the 1918 outbreak in humans followed a reassortment event within a mammal,[24] the exact origin of the 1918 strain remains elusive.[25] It is estimated that anywhere from 50 to 100 million people were killed worldwide.[20][26]

1976 U.S. outbreak

On February 5, 1976, a United States army recruit at Fort Dix said he felt tired and weak. He died the next day, and four of his fellow soldiers were later hospitalized. Two weeks after his death, health officials announced the cause of death was a new strain of swine flu. The strain, a variant of H1N1, is known as A/New Jersey/1976 (H1N1). It was detected only from January 19 to February 9 and did not spread beyond Fort Dix.[27]
U.S. President Ford receives a swine flu vaccination
 
This new strain appeared to be closely related to the strain involved in the 1918 flu pandemic. Moreover, the ensuing increased surveillance uncovered another strain in circulation in the U.S.: A/Victoria/75 (H3N2) spread simultaneously, also caused illness, and persisted until March.[27] Alarmed public health officials decided action must be taken to head off another major pandemic, and urged President Gerald Ford that every person in the U.S. be vaccinated for the disease.[28]
The vaccination program was plagued by delays and public relations problems.[29] On October 1, 1976, immunizations began, and three senior citizens died soon after receiving their injections. This resulted in a media outcry that linked these deaths to the immunizations, despite the lack of any proof the vaccine was the cause. According to science writer Patrick Di Justo, however, by the time the truth was known—that the deaths were not proven to be related to the vaccine—it was too late. "The government had long feared mass panic about swine flu—now they feared mass panic about the swine flu vaccinations." This became a strong setback to the program.[30]
There were reports of Guillain-Barré syndrome, a paralyzing neuromuscular disorder, affecting some people who had received swine flu immunizations. Although if a link exists is still not clear, this syndrome may be a side effect of influenza vaccines. As a result, Di Justo writes, "the public refused to trust a government-operated health program that killed old people and crippled young people." In total, 48,161,019 Americans, or just over 22% of the population, had been immunized by the time the National Influenza Immunization Program was effectively halted on December 16, 1976.[31] [32]
Overall, there were 1098 cases of Guillain-Barré Syndrome (GBS) recorded nationwide by CDC surveillance, 532 of which occurred after vaccination and 543 before vaccination.[33] About one to two cases per 100,000 people of GBS occur every year, whether or not people have been vaccinated.[34] The vaccination program seems to have increased this normal risk of developing GBS by about to one extra case per 100,000 vaccinations.[34]
Recompensation charges were filed for over 4000 cases of severe vaccination damage, including 25 deaths, totalling US$ 3.5 billion, by 1979.[35] The CDC stated most studies on modern influenza vaccines have seen no link with GBS,[34][36][37] Although one review gives an incidence of about one case per million vaccinations,[38] a large study in China, reported in the NEJM, covering close to 100 million doses of H1N1 flu vaccine, found only 11 cases of Guillain-Barre syndrome, which is lower than the normal rate of the disease in China; "The risk-benefit ratio, which is what vaccines and everything in medicine is about, is overwhelmingly in favor of vaccination."[39]

1988 zoonosis

In September 1988, a swine flu virus killed one woman and infected others. A 32-year old woman, Barbara Ann Wieners, was eight months pregnant when she and her husband, Ed, became ill after visiting the hog barn at a county fair in Walworth County, Wisconsin. Barbara died eight days later, after developing pneumonia.[40] The only pathogen identified was an H1N1 strain of swine influenza virus.[41] Doctors were able to induce labor and deliver a healthy daughter before she died. Her husband recovered from his symptoms.
Influenza-like illness (ILI) was reportedly widespread among the pigs exhibited at the fair. Of the 25 swine exhibitors aged 9 to 19 at the fair, 19 tested positive for antibodies to SIV, but no serious illnesses were seen. The virus was able to spread between people, since one to three health care personnel who had cared for the pregnant woman developed mild, influenza-like illnesses, and antibody tests suggested they had been infected with swine flu, but there was no community outbreak.[42][43]

1998 US outbreak in swine

In 1998, swine flu was found in pigs in four U.S. states. Within a year, it had spread through pig populations across the United States. Scientists found this virus had originated in pigs as a recombinant form of flu strains from birds and humans. This outbreak confirmed that pigs can serve as a crucible where novel influenza viruses emerge as a result of the reassortment of genes from different strains.[44][45][46] Genetic components of these 1998 triple-hybrid stains would later form six out of the eight viral gene segments in the 2009 flu outbreak.[47][48][49][50][51]

2007 Philippine outbreak in swine

On August 20, 2007, the Department of Agriculture officers investigated the outbreak (epizootic) of swine flu in Nueva Ecija and central Luzon, Philippines. The mortality rate is less than 10% for swine flu, unless there are complications like hog cholera. On July 27, 2007, the Philippine National Meat Inspection Service (NMIS) raised a hog cholera "red alert" warning over Metro Manila and five regions of Luzon after the disease spread to backyard pig farms in Bulacan and Pampanga, even if these tested negative for the swine flu virus.[52][53]

2009 Northern Ireland outbreak in swine

Since November 2009, 14 deaths as a result of swine flu in Northern Ireland have been reported. The majority of the victims were reported to have pre-existing health conditions which had lowered their immunity. This closely corresponds to the 19 patients who had died in the year prior due to swine flu, where 18 of the 19 were determined to have lowered immune systems. Because of this, many mothers who have just given birth are strongly encouraged to get a flu shot because their immune systems are vulnerable. Also, studies have shown that people between the ages of 15 and 44 have the highest rate of infection. Although most people now recover, having any conditions that lower one's immune system increases the risk of having the flu become potentially lethal. In Northern Ireland now, approximately 56% of all people under 65 who are entitled to the vaccine have gotten the shot, and the outbreak is said to be under control.[54]

H1N1 virus pandemic history

A study conducted in 2009, and published in the journal Nature, has managed to establish the evolutionary origin of the flu strain of swine origin (S-OIV).[55]
The phylogenetic origin of the flu virus that caused the 2009 pandemics can be traced before 1918. Around 1918, the ancestral virus, of avian origin, crossed the species boundaries and infected humans as human H1N1. The same phenomenon took place soon after in America, where the human virus was infecting pigs; it led to the emergence of the H1N1 swine strain, which later became the classic swine flu.
New events of reassortment were not reported until 1968, when the avian strain H1N1 infected humans again; this time the virus met the strain H2N2, and the reassortment originated the strain H3N2. This strain has remained as a stable flu strain until now.
The mid-1970s were important for the evolution of flu strains. First, the re-emergence of the human H1N1 strain became a seasonal strain. Then, a small outbreak of swine H1N1 occurred in humans, and finally, the human H2N2 strain apparently became extinct. Around 1979, the avian H1N1 strain infected pigs and gave rise to Euroasiatic swine flu and H1N1 Euroasiatic swine virus, which is still being transmitted in swine populations.
The critical moment for the 2009 outbreak was between 1990 and 1993. A triple reassortment event in a pig host of North American H1N1 swine virus, the human H3N2 virus and avian H1N1 virus generated the swine H1N2 strain. Finally, the last step in S-OIV history was in 2009, when the virus H1N2 co-infected a human host at the same time as the Euroasiatic H1N1 swine strain. This led to the emergence of a new human H1N1 strain, which caused the 2009 pandemic.
On June 11, 2009, the World Health Organization raised the worldwide pandemic alert level to Phase 6 for swine flu, which is the highest alert level.[56] This alert level means that the swine flu had spread worldwide and there were cases of people with the virus in most countries. The pandemic level identifies the spread of the disease or virus and not necessarily the severity of the disease.
Swine flu spread very rapidly worldwide due to its high human-to-human transmission rate and due to the frequency of air travel.[56]

Transmission

Transmission between pigs

Influenza is quite common in pigs, with about half of breeding pigs having been exposed to the virus in the US.[57] Antibodies to the virus are also common in pigs in other countries.[57]
The main route of transmission is through direct contact between infected and uninfected animals.[11] These close contacts are particularly common during animal transport. Intensive farming may also increase the risk of transmission, as the pigs are raised in very close proximity to each other.[58][59] The direct transfer of the virus probably occurs either by pigs touching noses, or through dried mucus. Airborne transmission through the aerosols produced by pigs coughing or sneezing are also an important means of infection.[11] The virus usually spreads quickly through a herd, infecting all the pigs within just a few days.[2] Transmission may also occur through wild animals, such as wild boar, which can spread the disease between farms.[60]

Transmission to humans

People who work with poultry and swine, especially those with intense exposures, are at increased risk of zoonotic infection with influenza virus endemic in these animals, and constitute a population of human hosts in which zoonosis and reassortment can co-occur.[61] Vaccination of these workers against influenza and surveillance for new influenza strains among this population may therefore be an important public health measure.[62] Transmission of influenza from swine to humans who work with swine was documented in a small surveillance study performed in 2004 at the University of Iowa.[63] This study, among others, forms the basis of a recommendation that people whose jobs involve handling poultry and swine be the focus of increased public health surveillance.[61] Other professions at particular risk of infection are veterinarians and meat processing workers, although the risk of infection for both of these groups is lower than that of farm workers.[64]

Interaction with avian H5N1 in pigs

Pigs are unusual as they can be infected with influenza strains that usually infect three different species: pigs, birds and humans.[65] This makes pigs a host where influenza viruses might exchange genes, producing new and dangerous strains.[65] Avian influenza virus H3N2 is endemic in pigs in China, and has been detected in pigs in Vietnam, increasing fears of the emergence of new variant strains.[66] H3N2 evolved from H2N2 by antigenic shift.[67] In August 2004, researchers in China found H5N1 in pigs.[68]
Main symptoms of swine flu in swine[2]
 
These H5N1 infections may be quite common; in a survey of 10 apparently healthy pigs housed near poultry farms in West Java, where avian flu had broken out, five of the pig samples contained the H5N1 virus. The Indonesian government has since found similar results in the same region. Additional tests of 150 pigs outside the area were negative.[69][70]

Signs and symptoms

In swine

In pigs, influenza infection produces fever, lethargy, sneezing, coughing, difficulty breathing and decreased appetite.[11] In some cases the infection can cause abortion. Although mortality is usually low (around 1–4%),[2] the virus can produce weight loss and poor growth, causing economic loss to farmers.[11] Infected pigs can lose up to 12 pounds of body weight over a three- to four-week period.[11]

In humans

Main symptoms of swine flu in humans[71]
 
Direct transmission of a swine flu virus from pigs to humans is occasionally possible (called zoonotic swine flu). In all, 50 cases are known to have occurred since the first report in medical literature in 1958, which have resulted in a total of six deaths.[72] Of these six people, one was pregnant, one had leukemia, one had Hodgkin's lymphoma and two were known to be previously healthy.[72] Despite these apparently low numbers of infections, the true rate of infection may be higher, since most cases only cause a very mild disease, and will probably never be reported or diagnosed.[72]
In this video, Dr. Joe Bresee, with CDC's Influenza Division, describes the symptoms of swine flu and warning signs to look for that indicate the need for urgent medical attention.
See also: See this video with subtitles on YouTube [73]
 
According to the Centers for Disease Control and Prevention (CDC), in humans the symptoms of the 2009 "swine flu" H1N1 virus are similar to those of influenza and of influenza-like illness in general. Symptoms include fever, cough, sore throat, body aches, headache, chills and fatigue. The 2009 outbreak has shown an increased percentage of patients reporting diarrhea and vomiting.[74] The 2009 H1N1 virus is not zoonotic swine flu, as it is not transmitted from pigs to humans, but from person to person.
Because these symptoms are not specific to swine flu, a differential diagnosis of probable swine flu requires not only symptoms, but also a high likelihood of swine flu due to the person's recent history. For example, during the 2009 swine flu outbreak in the United States, the CDC advised physicians to "consider swine influenza infection in the differential diagnosis of patients with acute febrile respiratory illness who have either been in contact with persons with confirmed swine flu, or who were in one of the five U.S. states that have reported swine flu cases or in Mexico during the seven days preceding their illness onset."[75] A diagnosis of confirmed swine flu requires laboratory testing of a respiratory sample (a simple nose and throat swab).[75]
The most common cause of death is respiratory failure. Other causes of death are pneumonia (leading to sepsis),[76] high fever (leading to neurological problems), dehydration (from excessive vomiting and diarrhea), electrolyte imbalance and kidney failure.[77] Fatalities are more likely in young children and the elderly.

Diagnosis

Thermal scanning of passengers arriving at Singapore Changi airport
 
The CDC recommends real time PCR as the method of choice for diagnosing H1N1.[78] This method allows a specific diagnosis of novel influenza (H1N1) as opposed to seasonal influenza. Near-patient point-of-care tests are in development.[79]

Prevention

Prevention of swine influenza has three components: prevention in swine, prevention of transmission to humans, and prevention of its spread among humans.

In swine

Methods of preventing the spread of influenza among swine include facility management, herd management, and vaccination (ATCvet code: QI09AA03). Because much of the illness and death associated with swine flu involves secondary infection by other pathogens, control strategies that rely on vaccination may be insufficient.
Control of swine influenza by vaccination has become more difficult in recent decades, as the evolution of the virus has resulted in inconsistent responses to traditional vaccines. Standard commercial swine flu vaccines are effective in controlling the infection when the virus strains match enough to have significant cross-protection, and custom (autogenous) vaccines made from the specific viruses isolated are created and used in the more difficult cases.[80][81] Present vaccination strategies for SIV control and prevention in swine farms typically include the use of one of several bivalent SIV vaccines commercially available in the United States. Of the 97 recent H3N2 isolates examined, only 41 isolates had strong serologic cross-reactions with antiserum to three commercial SIV vaccines. Since the protective ability of influenza vaccines depends primarily on the closeness of the match between the vaccine virus and the epidemic virus, the presence of nonreactive H3N2 SIV variants suggests current commercial vaccines might not effectively protect pigs from infection with a majority of H3N2 viruses.[72][82] The United States Department of Agriculture researchers say while pig vaccination keeps pigs from getting sick, it does not block infection or shedding of the virus.[83]
Facility management includes using disinfectants and ambient temperature to control viruses in the environment. They are unlikely to survive outside living cells for more than two weeks, except in cold (but above freezing) conditions, and are readily inactivated by disinfectants.[2] Herd management includes not adding pigs carrying influenza to herds that have not been exposed to the virus. The virus survives in healthy carrier pigs for up to three months, and can be recovered from them between outbreaks. Carrier pigs are usually responsible for the introduction of SIV into previously uninfected herds and countries, so new animals should be quarantined.[57] After an outbreak, as immunity in exposed pigs wanes, new outbreaks of the same strain can occur.[2]

In humans

Prevention of pig-to-human transmission
AntigenicShift HiRes vector.svg
Swine can be infected by both avian and human flu strains of influenza, and therefore are hosts where the antigenic shifts can occur that create new influenza strains.

The transmission from swine to humans is believed to occur mainly in swine farms, where farmers are in close contact with live pigs. Although strains of swine influenza are usually not able to infect humans, this may occasionally happen, so farmers and veterinarians are encouraged to use face masks when dealing with infected animals. The use of vaccines on swine to prevent their infection is a major method of limiting swine-to-human transmission. Risk factors that may contribute to swine-to-human transmission include smoking and, especially, not wearing gloves when working with sick animals, thereby increasing the likelihood of subsequent hand-to-eye, hand-to-nose or hand-to-mouth transmission.[84]
Prevention of human-to-human transmission
Influenza spreads between humans when infected people cough or sneeze, then other people breathe in the virus or touch something with the virus on it and then touch their own face.[85] "Avoid touching your eyes, nose or mouth. Germs spread this way."[86] Swine flu cannot be spread by pork products, since the virus is not transmitted through food.[85] The swine flu in humans is most contagious during the first five days of the illness, although some people, most commonly children, can remain contagious for up to ten days. Diagnosis can be made by sending a specimen, collected during the first five days, for analysis.[87]
Thermal imaging camera and screen, photographed in an airport terminal in Greece - thermal imaging can detect elevated body temperature, one of the signs of the virus H1N1 (swine influenza).
 
Recommendations to prevent spread of the virus among humans include using standard infection control, which includes frequent washing of hands with soap and water or with alcohol-based hand sanitizers, especially after being out in public.[88] Chance of transmission is also reduced by disinfecting household surfaces, which can be done effectively with a diluted chlorine bleach solution.[89]
Experts agree hand-washing can help prevent viral infections, including ordinary and the swine flu infections. Also, avoiding touching one's eyes, nose or mouth with one's hands helps to prevent the flu.[86] Influenza can spread in coughs or sneezes, but an increasing body of evidence shows small droplets containing the virus can linger on tabletops, telephones and other surfaces and be transferred via the fingers to the eyes, nose or mouth. Alcohol-based gel or foam hand sanitizers work well to destroy viruses and bacteria. Anyone with flu-like symptoms, such as a sudden fever, cough or muscle aches, should stay away from work or public transportation, and should contact a doctor for advice.[90]
Social distancing, another tactic, is staying away from other people who might be infected, and can include avoiding large gatherings, spreading out a little at work, or perhaps staying home and lying low if an infection is spreading in a community. Public health and other responsible authorities have action plans which may request or require social distancing actions, depending on the severity of the outbreak.

Vaccination

Vaccines are available for different kinds of swine flu. The U.S. Food and Drug Administration (FDA) approved the new swine flu vaccine for use in the United States on September 15, 2009.[91] Studies by the National Institutes of Health show a single dose creates enough antibodies to protect against the virus within about 10 days.[92]
In the aftermath of the 2009 pandemic, several studies were conducted to see who received influenza vaccines. These studies show that whites are much more likely to be vaccinated for seasonal influenza and for the H1N1 strain than African Americans [93] This could be due to several factors. Historically, there has been mistrust of vaccines and of the medical community from African Americans. Many African Americans do not believe vaccines or doctors to be effective. This mistrust stems from the exploitation of the African American communities during studies like the Tuskegee study. Additionally, vaccines are typically administered in clinics, hospitals, or doctor’s offices. Many people of lower socioeconomic status are less likely to receive vaccinations because they do not have health insurance.

Treatment

In swine

As swine influenza is rarely fatal to pigs, little treatment beyond rest and supportive care is required.[57] Instead, veterinary efforts are focused on preventing the spread of the virus throughout the farm, or to other farms.[11] Vaccination and animal management techniques are most important in these efforts. Antibiotics are also used to treat this disease, which although they have no effect against the influenza virus, do help prevent bacterial pneumonia and other secondary infections in influenza-weakened herds.[57]

In humans

If a person becomes sick with swine flu, antiviral drugs can make the illness milder and make the patient feel better faster. They may also prevent serious flu complications. For treatment, antiviral drugs work best if started soon after getting sick (within two days of symptoms). Beside antivirals, supportive care at home or in a hospital focuses on controlling fevers, relieving pain and maintaining fluid balance, as well as identifying and treating any secondary infections or other medical problems. The U.S. Centers for Disease Control and Prevention recommends the use of oseltamivir (Tamiflu) or zanamivir (Relenza) for the treatment and/or prevention of infection with swine influenza viruses; however, the majority of people infected with the virus make a full recovery without requiring medical attention or antiviral drugs.[94] The virus isolated in the 2009 outbreak have been found resistant to amantadine and rimantadine.[95]
In the U.S., on April 27, 2009, the FDA issued Emergency Use Authorizations to make available Relenza and Tamiflu antiviral drugs to treat the swine influenza virus in cases for which they are currently unapproved. The agency issued these EUAs to allow treatment of patients younger than the current approval allows and to allow the widespread distribution of the drugs, including by volunteers.[96]

See also