If you sneeze when flowers bloom in the spring and tear up in the presence of a cat, your Neanderthal DNA may be to blame.
About
 2% of the DNA in most people alive today came from trysts between 
ancient humans and their Neanderthal neighbors tens of thousands of 
years ago, recent studies have shown. Now, scientists are trying to 
determine what, if any, impact that Neanderthal genetic legacy has on 
our contemporary lives.
  In a pair of papers published this week in the American Journal of 
Human Genetics, two research teams report that in many people, a group 
of genes that govern the first line of defense against pathogens was 
probably inherited from Neanderthals.
These same genes appear to 
play a role in some people’s allergic reaction to things like pollen and
 pet fur as well, the scientists said.
    
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“It's a bit speculative, but perhaps this is some kind of trade-off,” said 
Janet Kelso, a researcher at the Max Planck Institute for Evolutionary Anthropology in Leipzig, Germany, and senior author of 
one of the new studies.
 “Increased resistance to bacterial infection was advantageous, but may 
have resulted in some increased sensitivity to non-pathogenic 
allergens.”
About
 50,000 years ago, the modern humans who left Africa encountered 
Neanderthal settlements somewhere in the Middle East, scientists 
believe. On some occasions, these meetings 
led to couplings whose 
legacy is apparent in the genomes of people with ancestors from Europe and Asia.
Not everyone with Neanderthal DNA inherited the same genes. But the immunity genes appear to be more popular than others.
Among
 some Asian and European populations, the researchers found that these 
particular Neanderthal genes can be found in 50% of people.
“That's huge,” said 
Lluis Quintana-Murci, an evolutionary geneticist at the Pasteur Institute in Paris and senior author of the 
other study. “It came as a big surprise to us.”
The
 findings imply that these Neanderthal genes must have served our 
ancestors well if they are still hanging out in our genome today, and 
especially at such high frequency, said 
Peter Parham,
 a professor of microbiology and immunology at Stanford School of 
Medicine. If the DNA weren’t valuable, it would have been flushed out of
 the human gene pool.
“It suggests there was a benefit for the 
migrating modern human and the archaic human to get together,” said 
Parham, who wasn’t involved in the research. “What has survived is a 
hybridization of those populations.”
Both
 of the research groups report on a cluster of three genes — known 
collectively as TLR6-TLR1-TLR10 — that make up part of the body's innate
 immune response to invading bacteria and viruses.
The innate 
immune response is different from the acquired immune response that we 
get through exposure to pathogens, either through vaccines or simply 
getting sick. Innate immunity kicks in first, and if it’s successful, it
 can destroy a pathogen in a few hours, before we even know we are sick.
Because
 this innate immune response is so useful, it has been a strong site of 
positive selection over time, Quintana-Murci said.
Though both 
groups of researchers came to the same conclusion that Neanderthal DNA 
plays an important role in immunity, the teams were asking different 
questions at the outset of their studies.
Quintana-Murci's group 
is trying to understand how microscopic pathogens have influenced the 
human genome as our species has evolved.
Because infectious 
diseases have killed so many people throughout human history, it makes 
sense that genes involved in immunity would spread through natural 
selection.
For
 their new study, Quintana-Murci and his colleagues examined 1,500 
innate immunity genes in people and matched them up with a previously 
published map of the Neanderthal DNA in the human genome.
The team
 calculated the percentage of Neanderthal DNA in innate immunity genes 
as well as in other genes. When they compared them, they saw that innate
 immunity genes had much higher proportions of Neanderthal sequences.
Kelso's
 group, on the other hand, is interested in ancient genomes like those 
of Neanderthals. In particular, her team aims to uncover the functional 
consequences of long-ago interbreeding between modern humans and 
Neanderthals.
The Max Planck Institute scientists analyzed the 
genomes of thousands of present-day people from all over the world, 
looking for evidence of extended regions with high similarity to the DNA
 of Neanderthals. Then they checked how often they saw those 
Neanderthal-like DNA sequences in humans alive today.
“What emerged was this region containing three genes involved in the innate immune system,” she said.
Both
 research groups said there is still much work to be done to determine 
exactly how this Neanderthal DNA helped humans survive.
However, 
they are already certain that interbreeding with Neanderthals aided 
early humans as they faced new dangers after leaving Africa.
“The 
things we have inherited from Neanderthals are largely things that have 
allowed us to adapt to our environment,” Kelso said. “This is perhaps 
not completely surprising.”
Because Neanderthals had lived in 
Europe and western Asia for about 200,000 years before modern humans got
 there, they were probably already well adapted to the local climate, 
foods and pathogens.
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“By interbreeding with these archaic people, modern humans could then acquire some of these adaptations,” Kelso said.
Parham
 of Stanford said the results are convincing, especially since they were
 made by two independent groups that essentially confirmed each other.
The results add to a growing body of work that highlights our debt to our Neanderthal relatives.
“We're right in the beginning,” Parham 
said. “This type of work has really lit a fire beneath archaeologists to
 try to find more and more samples of Neanderthals so geneticists can do
 more population studies.”