Monday, October 6, 2014

'In 1976 I discovered Ebola - now I fear an unimaginable tragedy'

http://www.theguardian.com/us

Peter Piot was a researcher at a lab in Antwerp when a pilot brought him a blood sample from a Belgian nun who had fallen mysteriously ill in Zaire
Peter Piot
 
Professor Peter Piot, the Director of the London School of Hygiene and Tropical Medicine: ‘Around June it became clear to me there was something different about this outbreak. I began to get really worried’ Photograph: Leon Neal/AFP
 
Professor Piot, as a young scientist in Antwerp, you were part of the team that discovered the Ebola virus in 1976. How did it happen?
I still remember exactly. One day in September, a pilot from Sabena Airlines brought us a shiny blue Thermos and a letter from a doctor in Kinshasa in what was then Zaire. In the Thermos, he wrote, there was a blood sample from a Belgian nun who had recently fallen ill from a mysterious sickness in Yambuku, a remote village in the northern part of the country. He asked us to test the sample for yellow fever.
These days, Ebola may only be researched in high-security laboratories. How did you protect yourself back then?
We had no idea how dangerous the virus was. And there were no high-security labs in Belgium. We just wore our white lab coats and protective gloves. When we opened the Thermos, the ice inside had largely melted and one of the vials had broken. Blood and glass shards were floating in the ice water. We fished the other, intact, test tube out of the slop and began examining the blood for pathogens, using the methods that were standard at the time.
But the yellow fever virus apparently had nothing to do with the nun's illness.
No. And the tests for Lassa fever and typhoid were also negative. What, then, could it be? Our hopes were dependent on being able to isolate the virus from the sample. To do so, we injected it into mice and other lab animals. At first nothing happened for several days. We thought that perhaps the pathogen had been damaged from insufficient refrigeration in the Thermos. But then one animal after the next began to die. We began to realise that the sample contained something quite deadly.
But you continued?
Other samples from the nun, who had since died, arrived from Kinshasa. When we were just about able to begin examining the virus under an electron microscope, the World Health Organisation instructed us to send all of our samples to a high-security lab in England. But my boss at the time wanted to bring our work to conclusion no matter what. He grabbed a vial containing virus material to examine it, but his hand was shaking and he dropped it on a colleague's foot. The vial shattered. My only thought was: "Oh, shit!" We immediately disinfected everything, and luckily our colleague was wearing thick leather shoes. Nothing happened to any of us.
In the end, you were finally able to create an image of the virus using the electron microscope.
Yes, and our first thought was: "What the hell is that?" The virus that we had spent so much time searching for was very big, very long and worm-like. It had no similarities with yellow fever. Rather, it looked like the extremely dangerous Marburg virus which, like ebola, causes a haemorrhagic fever. In the 1960s the virus killed several laboratory workers in Marburg, Germany.
Were you afraid at that point?
I knew almost nothing about the Marburg virus at the time. When I tell my students about it today, they think I must come from the stone age. But I actually had to go the library and look it up in an atlas of virology. It was the American Centres for Disease Control which determined a short time later that it wasn't the Marburg virus, but a related, unknown virus. We had also learned in the meantime that hundreds of people had already succumbed to the virus in Yambuku and the area around it.
A few days later, you became one of the first scientists to fly to Zaire.
Yes. The nun who had died and her fellow sisters were all from Belgium. In Yambuku, which had been part of the Belgian Congo, they operated a small mission hospital. When the Belgian government decided to send someone, I volunteered immediately. I was 27 and felt a bit like my childhood hero, Tintin. And, I have to admit, I was intoxicated by the chance to track down something totally new.

Suspected Ebola patient in Monrovia  
 
A girl is led to an ambulance after showing signs of Ebola infection in the village of Freeman Reserve, 30 miles north of the Liberian capital, Monrovia. Photograph: Jerome Delay/AP Was there any room for fear, or at least worry?

Of course it was clear to us that we were dealing with one of the deadliest infectious diseases the world had ever seen – and we had no idea that it was transmitted via bodily fluids! It could also have been mosquitoes. We wore protective suits and latex gloves and I even borrowed a pair of motorcycle goggles to cover my eyes. But in the jungle heat it was impossible to use the gas masks that we bought in Kinshasa. Even so, the Ebola patients I treated were probably just as shocked by my appearance as they were about their intense suffering. I took blood from around 10 of these patients. I was most worried about accidentally poking myself with the needle and infecting myself that way.
But you apparently managed to avoid becoming infected.
Well, at some point I did actually develop a high fever, a headache and diarrhoea …
... similar to Ebola symptoms?
Exactly. I immediately thought: "Damn, this is it!" But then I tried to keep my cool. I knew the symptoms I had could be from something completely different and harmless. And it really would have been stupid to spend two weeks in the horrible isolation tent that had been set up for us scientists for the worst case. So I just stayed alone in my room and waited. Of course, I didn't get a wink of sleep, but luckily I began feeling better by the next day. It was just a gastrointestinal infection. Actually, that is the best thing that can happen in your life: you look death in the eye but survive. It changed my whole approach, my whole outlook on life at the time.
You were also the one who gave the virus its name. Why Ebola?
On that day our team sat together late into the night – we had also had a couple of drinks – discussing the question. We definitely didn't want to name the new pathogen "Yambuku virus", because that would have stigmatised the place forever. There was a map hanging on the wall and our American team leader suggested looking for the nearest river and giving the virus its name. It was the Ebola river. So by around three or four in the morning we had found a name. But the map was small and inexact. We only learned later that the nearest river was actually a different one. But Ebola is a nice name, isn't it?
In the end, you discovered that the Belgian nuns had unwittingly spread the virus. How did that happen?
In their hospital they regularly gave pregnant women vitamin injections using unsterilised needles. By doing so, they infected many young women in Yambuku with the virus. We told the nuns about the terrible mistake they had made, but looking back I would say that we were much too careful in our choice of words. Clinics that failed to observe this and other rules of hygiene functioned as catalysts in all additional Ebola outbreaks. They drastically sped up the spread of the virus or made the spread possible in the first place. Even in the current Ebola outbreak in west Africa, hospitals unfortunately played this ignominious role in the beginning.
After Yambuku, you spent the next 30 years of your professional life devoted to combating Aids. But now Ebola has caught up to you again. American scientists fear that hundreds of thousands of people could ultimately become infected. Was such an epidemic to be expected?
No, not at all. On the contrary, I always thought that Ebola, in comparison to Aids or malaria, didn't present much of a problem because the outbreaks were always brief and local. Around June it became clear to me that there was something fundamentally different about this outbreak. At about the same time, the aid organisation Médecins Sans Frontières sounded the alarm. We Flemish tend to be rather unemotional, but it was at that point that I began to get really worried.
Why did WHO react so late?
On the one hand, it was because their African regional office isn't staffed with the most capable people but with political appointees. And the headquarters in Geneva suffered large budget cuts that had been agreed to by member states. The department for haemorrhagic fever and the one responsible for the management of epidemic emergencies were hit hard. But since August WHO has regained a leadership role.
There is actually a well-established procedure for curtailing Ebola outbreaks: isolating those infected and closely monitoring those who had contact with them. How could a catastrophe such as the one we are now seeing even happen?
I think it is what people call a perfect storm: when every individual circumstance is a bit worse than normal and they then combine to create a disaster. And with this epidemic there were many factors that were disadvantageous from the very beginning. Some of the countries involved were just emerging from terrible civil wars, many of their doctors had fled and their healthcare systems had collapsed. In all of Liberia, for example, there were only 51 doctors in 2010, and many of them have since died of Ebola.
The fact that the outbreak began in the densely populated border region between Guinea, Sierra Leone and Liberia ...
… also contributed to the catastrophe. Because the people there are extremely mobile, it was much more difficult than usual to track down those who had had contact with the infected people. Because the dead in this region are traditionally buried in the towns and villages they were born in, there were highly contagious Ebola corpses travelling back and forth across the borders in pickups and taxis. The result was that the epidemic kept flaring up in different places.
For the first time in its history, the virus also reached metropolises such as Monrovia and Freetown. Is that the worst thing that can happen?
In large cities – particularly in chaotic slums – it is virtually impossible to find those who had contact with patients, no matter how great the effort. That is why I am so worried about Nigeria as well. The country is home to mega-cities like Lagos and Port Harcourt, and if the Ebola virus lodges there and begins to spread, it would be an unimaginable catastrophe.
Have we completely lost control of the epidemic?
I have always been an optimist and I think that we now have no other choice than to try everything, really everything. It's good that the United States and some other countries are finally beginning to help. But Germany or even Belgium, for example, must do a lot more. And it should be clear to all of us: This isn't just an epidemic any more. This is a humanitarian catastrophe. We don't just need care personnel, but also logistics experts, trucks, jeeps and foodstuffs. Such an epidemic can destabilise entire regions. I can only hope that we will be able to get it under control. I really never thought that it could get this bad.
What can really be done in a situation when anyone can become infected on the streets and, like in Monrovia, even the taxis are contaminated?
We urgently need to come up with new strategies. Currently, helpers are no longer able to care for all the patients in treatment centres. So caregivers need to teach family members who are providing care to patients how to protect themselves from infection to the extent possible. This on-site educational work is currently the greatest challenge. Sierra Leone experimented with a three-day curfew in an attempt to at least flatten out the infection curve a bit. At first I thought: "That is totally crazy." But now I wonder, "why not?" At least, as long as these measures aren't imposed with military power.
A three-day curfew sounds a bit desperate.
Yes, it is rather medieval. But what can you do? Even in 2014, we hardly have any way to combat this virus.
Do you think we might be facing the beginnings of a pandemic?
There will certainly be Ebola patients from Africa who come to us in the hopes of receiving treatment. And they might even infect a few people here who may then die. But an outbreak in Europe or North America would quickly be brought under control. I am more worried about the many people from India who work in trade or industry in west Africa. It would only take one of them to become infected, travel to India to visit relatives during the virus's incubation period, and then, once he becomes sick, go to a public hospital there. Doctors and nurses in India, too, often don't wear protective gloves. They would immediately become infected and spread the virus.
The virus is continually changing its genetic makeup. The more people who become infected, the greater the chance becomes that it will mutate ...
... which might speed its spread. Yes, that really is the apocalyptic scenario. Humans are actually just an accidental host for the virus, and not a good one. From the perspective of a virus, it isn't desirable for its host, within which the pathogen hopes to multiply, to die so quickly. It would be much better for the virus to allow us to stay alive longer.
Could the virus suddenly change itself such that it could be spread through the air?
Like measles, you mean? Luckily that is extremely unlikely. But a mutation that would allow Ebola patients to live a couple of weeks longer is certainly possible and would be advantageous for the virus. But that would allow Ebola patients to infect many, many more people than is currently the case.
But that is just speculation, isn't it?
Certainly. But it is just one of many possible ways the virus could change to spread itself more easily. And it is clear that the virus is mutating.
You and two colleagues wrote a piece for the Wall Street Journal supporting the testing of experimental drugs. Do you think that could be the solution?
Patients could probably be treated most quickly with blood serum from Ebola survivors, even if that would likely be extremely difficult given the chaotic local conditions. We need to find out now if these methods, or if experimental drugs like ZMapp, really help. But we should definitely not rely entirely on new treatments. For most people, they will come too late in this epidemic. But if they help, they should be made available for the next outbreak.
Testing of two vaccines is also beginning. It will take a while, of course, but could it be that only a vaccine can stop the epidemic?
I hope that's not the case. But who knows? Maybe.
In Zaire during that first outbreak, a hospital with poor hygiene was responsible for spreading the illness. Today almost the same thing is happening. Was Louis Pasteur right when he said: "It is the microbes who will have the last word"?
Of course, we are a long way away from declaring victory over bacteria and viruses. HIV is still here; in London alone, five gay men become infected daily. An increasing number of bacteria are becoming resistant to antibiotics. And I can still see the Ebola patients in Yambuku, how they died in their shacks and we couldn't do anything except let them die. In principle, it's still the same today. That is very depressing. But it also provides me with a strong motivation to do something. I love life. That is why I am doing everything I can to convince the powerful in this world to finally send sufficient help to west Africa. Now!
Der Spiegel

Friday, October 3, 2014

HIV pandemic's origins located: It may have emerged in Congo in 1920s

hiv
 Scanning electron micrograph of an HIV-infected H9 T cell. Credit: NIAID

 http://medicalxpress.com/

The HIV pandemic with us today is almost certain to have begun its global spread from Kinshasa, the capital of the Democratic Republic of the Congo (DRC), according to a new study.
An international team, led by Oxford University and University of Leuven scientists, has reconstructed the genetic history of the HIV-1 group M , the event that saw HIV spread across the African continent and around the world, and concluded that it originated in Kinshasa. The team's analysis suggests that the of group M is highly likely to have emerged in Kinshasa around 1920 (with 95% of estimated dates between 1909 and 1930).
HIV is known to have been transmitted from primates and apes to humans at least 13 times but only one of these transmission events has led to a human pandemic. It was only with the event that led to HIV-1 group M that a pandemic occurred, resulting in almost 75 million infections to date. The team's analysis suggests that, between the 1920s and 1950s, a 'perfect storm' of factors, including urban growth, strong railway links during Belgian colonial rule, and changes to the sex trade, combined to see HIV emerge from Kinshasa and spread across the globe.
A report of the research is published in this week's Science.
'Until now most studies have taken a piecemeal approach to HIV's genetic history, looking at particular HIV genomes in particular locations,' said Professor Oliver Pybus of Oxford University's Department of Zoology, a senior author of the paper. 'For the first time we have analysed all the available evidence using the latest phylogeographic techniques, which enable us to statistically estimate where a virus comes from. This means we can say with a high degree of certainty where and when the HIV pandemic originated. It seems a combination of factors in Kinshasa in the early 20th Century created a 'perfect storm' for the emergence of HIV, leading to a generalised epidemic with unstoppable momentum that unrolled across sub-Saharan Africa.'
'Our study required the development of a statistical framework for reconstructing the spread of viruses through space and time from their genome sequences,' said Professor Philippe Lemey of the University of Leuven's Rega Institute, another senior author of the paper. 'Once the pandemic's spatiotemporal origins were clear they could be compared with historical data and it became evident that the early spread of HIV-1 from Kinshasa to other population centres followed predictable patterns.'
One of the factors the team's analysis suggests was key to the HIV pandemic's origins was the DRC's transport links, in particular its railways, that made Kinshasa one of the best connected of all central African cities.
'Data from colonial archives tells us that by the end of 1940s over one million people were travelling through Kinshasa on the railways each year,' said Dr Nuno Faria of Oxford University's Department of Zoology, first author of the paper. 'Our genetic data tells us that HIV very quickly spread across the Democratic Republic of the Congo (a country the size of Western Europe), travelling with people along railways and waterways to reach Mbuji-Mayi and Lubumbashi in the extreme South and Kisangani in the far North by the end of the 1930s and early 1950s. This helped establishing early secondary foci of HIV-1 transmission in regions that were well connected to southern and eastern African countries. We think it is likely that the social changes around the independence in 1960 saw the virus 'break out' from small groups of infected people to infect the wider population and eventually the world.'
It had been suggested that demographic growth or genetic differences between HIV-1 group M and other strains might be major factors in the establishment of the HIV pandemic. However the team's evidence suggests that, alongside transport, social changes such as the changing behaviour of sex workers, and public health initiatives against other diseases that led to the unsafe use of needles may have contributed to turning HIV into a full-blown epidemic – supporting ideas originally put forward by study co-author Jacques Pepin from the Université de Sherbrooke, Canada.
Professor Oliver Pybus said: 'Our research suggests that following the original animal to human transmission of the virus (probably through the hunting or handling of bush meat) there was only a small 'window' during the Belgian colonial era for this particular strain of HIV to emerge and spread into a pandemic. By the 1960s transport systems, such as the railways, that enabled the virus to spread vast distances were less active, but by that time the seeds of the pandemic were already sown across Africa and beyond.'
The team says that more research is needed to understand the role different social factors may have played in the origins of the HIV pandemic; in particular research on archival specimens to study the origins and evolution of HIV, and research into the relationship between the spread of Hepatitis C and the use of unsafe needles as part of public health initiatives may give further insights into the conditions that helped HIV to spread so widely.
More information: The early spread and epidemic ignition of HIV-1 in human populations, Science, 2014. www.sciencemag.org/lookup/doi/… 1126/science.1256739

Friday, September 12, 2014

Ebola virus: 'Biological war' in Liberia

http://www.bbc.co.uk/news/

Health workers carry body of woman suspected to have died of Ebola in Clara Town, Monrovia (10 September 2014) 
 Ebola robs death of its dignity as victims' bodies are quickly
 burnt with the plastic suits they are wrapped in
With warnings from officials that the Ebola virus is "spreading like wildfire" in Liberia, Sarah Crowe, who works for the UN children's agency (Unicef), describes her week on the Ebola front line:
Flights into disaster zones are usually full of aid workers and journalists. Not this time.
The plane was one of the first in after some 10 airlines stopped flying to Liberia because of Ebola, and still it was empty.
When I was last in Liberia in 2006, it was to work on reintegration of child soldiers in a time of peace. Now the country is fighting a "biological war" from an unseen enemy without foot soldiers.
As we enter the airport, an unnerving sight - a team of health workers kitted out with masks and gloves asks us to wash our hands with a chlorine solution and takes our temperatures.
Health worker being sprayed with disinfectant  
Health workers themselves have to be frequently sprayed with disinfectant
It was to be the start of a new routine - the hours and days since, I have had my temperature taken about 15 times and have had to wash my hands with chlorine at the entrance to every building, every office, every store, and every hotel.

Start Quote

It was a normal pregnancy, but she was turned away by every hospital as staff were too afraid to take her in case she had Ebola”
Even in small villages. And yet ironically, despite all this, few health facilities are properly functioning.
The next morning, the breakfast room at the hotel is buzzing - a large group of scientists from the US Centers for Disease Control and Prevention (CDC) huddle around computers animatedly talking, checking charts and data.
The world's Ebola experts are here - writing the first draft of Ebola history in real time.
The capital, Monrovia, reveals itself as a city branded by Ebola posters shouting out what people know all too well by now - Ebola is deadly, protect yourself, wash your hands.
Human booby traps The talk in the car, on the radio is only about Ebola - people calling in want to know what to do when their child gets sick, they either fear health centres and hospitals or they are not treated.
line
Ebola virus disease (EVD)
Ebola virus
  • Symptoms include high fever, bleeding and central nervous system damage
  • Spread by body fluids, such as blood and saliva
  • Fatality rate can reach 90% - but current outbreak has mortality rate of about 55%
  • Incubation period is two to 21 days
  • There is no proven vaccine or cure
  • Supportive care such as rehydrating patients who have diarrhoea and vomiting can help recovery
  • Fruit bats, a delicacy for some West Africans, are considered to be virus's natural host
line
A colleague tells me she has just lost a family member about to give birth.
It was a normal pregnancy, but she was turned away by every hospital as staff were too afraid to take her in case she had Ebola.
She did not have the virus, but she died because of delivery complications. Her baby at least survived.
News of the US obstetrician in Liberia who contracted the deadly disease while delivering a baby has helped fuel such worries.
So far 169 Liberian health care workers have been affected by Ebola and 80 have died - a massive blow to a fragile health system.
Next I prepare to go up country to Lofa county where more warehouse space was needed - Unicef has delivered tonnes of equipment, including personal protective suits, chlorine and oral rehydration salts to Liberia - and more monitoring was required of those other now-neglected childhood killers like measles, diarrhoea and cholera.
Ebola has turned survivors into human booby traps, unexploded ordinance - touch and you die. Ebola psychosis is paralysing.
Liberian health worker disinfects taxi (9 September 2014) 
The workers often look like crop sprayers
Heavy rains lash down over the weekend - I shudder to think of Medecins Sans Frontieres and health ministry workers and patients battling under plastic sheeting in such rains.
Luckily the skies over Monrovia clear for the hour-and-a-half helicopter ride to the hot-zone border between Sierra Leone, Guinea, and Liberia.
In Voinjama, I'm out with a team of social mobilisers who interact and educate communities.
They are playing our song - Ebola Is Here - on a megaphone through the village.

Spinosaurus fossil: 'Giant swimming dinosaur' unearthed

http://www.bbc.co.uk/news/

 


Artist's impression of Spinosaurus 
 
 Spinosaurus is thought to be the largest known carnivore and would have feasted on huge fish and sharks

Related Stories

A giant fossil, unearthed in the Sahara desert, has given scientists an unprecedented look at the largest-known carnivorous dinosaur: Spinosaurus.
The 95-million-year-old remains confirm a long-held theory: that this is the first-known swimming dinosaur.
Scientists say the beast had flat, paddle-like feet and nostrils on top of its crocodilian head that would allow it to submerge with ease.
The research is published in the journal Science.
Lead author Nizar Ibrahim, a palaeontologist from the University of Chicago, said: "It is a really bizarre dinosaur - there's no real blueprint for it.
"It has a long neck, a long trunk, a long tail, a 7ft (2m) sail on its back and a snout like a crocodile.
"And when we look at the body proportions, the animal was clearly not as agile on land as other dinosaurs were, so I think it spent a substantial amount of time in the water."

While other ancient creatures, such as the plesiosaur and mosasaur, lived in the water, they are marine reptiles rather than dinosaurs, making Spinosaurus the only-known semi-aquatic dinosaur.
Spinosaurus aegyptiacus remains were first discovered about 100 years ago in Egypt, and were moved to a museum in Munich, Germany.
However, they were destroyed during World War II, when an Allied bomb hit the building.
A few drawings of the fossil survived, but since then only fragments of Spinosaurus bones have been found.
The new fossil, though, which was extracted from the Kem Kem fossil beds in eastern Morocco by a private collector, has provided scientists with a more detailed look at the dinosaur.
"For the very first time, we can piece together the information we have from the drawings of the old skeleton, the fragments of bones, and now this new fossil, and reconstruct this dinosaur," said Dr Ibrahim.

Reconstruction of Spinosaurus  
 
The dinosaur has a number of anatomical features that suggest it was semi-aquatic 
 
Life-size reconstruction of Spinosaurus 
  A life-size reconstruction of Spinosaurus is on display at the National Geographic Museum in Washington DC
 
The team says that Spinosaurus was a fearsome beast.
The researchers say that, at more than 15m (50ft) from nose to tail, it was potentially the largest of all the carnivorous dinosaurs - bigger even than the mighty Tyrannosaurus rex.
Scientists had long suspected that the giant could swim, but the new fossil offers yet more evidence for its semi-aquatic existence.
Dr Ibrahim explained: "The one thing we noticed was that the proportions were really bizarre. The hind limbs were shorter than in other predatory dinosaurs, the foot claws were quite wide and the feet almost paddle shaped.
"We thought: 'Wow - this looks looks like adaptations for a life mainly spent in water.'"
He added: "And then we noticed other things. The snout is very similar to that of fish-eating crocodiles, with interlocking cone-shaped teeth.
"And even the bones look more like those of aquatic animals than of other dinosaurs. They are very dense and that is something you see in animals like penguins or sea cows, and that is important for buoyancy in the water."
Its vast spiked dorsal sail, though, was probably more useful for attracting mates than aiding swimming.

Kem Kem fossil beds  
The fossil was unearthed from the Kem Kem fossil beds in Morocco
  
The researchers say that Spinosaurus lived in a place they describe as "the river of giants", a waterway that stretched from Morocco to Egypt.
They believe it would have feasted on giant sharks and other car-sized fish called coelacanths and lungfish, competing with enormous crocodile-like creatures for its prey.
Commenting on the research, Prof Paul Barrett, from London's Natural History Museum, said: "The idea that Spinosaurus was aquatic has been around for some time and this adds some useful new evidence to address that issue.
"But finding a more complete skeleton after the best material was destroyed in a WW2 bombing raid is significant, and this has allowed some surprising things to be found out about this animal.
"One of the things about this paper that struck me as particularly neat was the suggestion that Spinosaurus was a quadruped - all other meat-eating dinosaurs were bipeds. It would have moved in a really freaky, weird way in comparison with its relatives - whether on land or in water.
"One issue though, due to the way it was obtained - through a private collector - is that it would be good to get confirmation, such as the original excavation map, to show that all of the parts definitely came from a single skeleton."

Monday, September 1, 2014

Could Dinosaurs Have Survived?

The feathered dinosaur Microraptor pounces on a nest of primitive birds. Both species lived around 120 million years ago in what is now northern China. Credit: Brian Choo
 
The feathered dinosaur Microraptor pounces on a nest of primitive birds. Both species lived around 120 million years ago in what is now northern China. Credit: Brian Choo
Dinosaurs last lived on Earth about 65 million years ago. For many years, scientists have debated how and why dinosaurs disappeared. But improved tools and records of fossil remains have led some experts to agree about the disappearance of these ancient creatures. We get more from Jeri Watson.
University of Edinburgh researcher Steve Brusatte led the team of experts. They blamed a huge rock from space – a 10-kilometer-wide asteroid -- for the dinosaursdisappearance. Their findings appeared in the journal Biological Reviews.
“The asteroid did it.  But that asteroid probably hit at a particularly bad time.”
Steve Brusatte says the rocky object was responsible for environmental damage worldwide.  He says the asteroid caused tsunami waves, earthquakes, wildfires, acid rain and sudden temperature changes.                          
Mr. Brusatte and his team proposed that if the asteroid had struck the Earth a few million years earlier, the dinosaurs might have been better able to survive. By the time the asteroid struck, dinosaurs had already lost some of their strength
“A lot of the big plant eating dinosaurs, those horned dinosaurs like triceratops, the bottom of the food chain dinosaurs, the base of dinosaur ecosystems, those dinosaurs had declined a little bit in their diversity.”
He notes that dinosaur populations had grown and then decreased in number over 150 million years
His team’s report appears in the journal Biological Reviews.
But some plants and animals DID survive through the period of dinosaur extinction. Another study looks at one group of dinosaurs that lived through the disasters. It shows how large cold-blooded, meat–eating animals like Tyrannosaurus Rex may have developed into small, warm-blooded birds.                                              
Biologist Michael Lee works jointly with the South Australian Museum and the University of Adelaide.  He was the lead writer of the study.  He and his team centered their efforts on one group of dinosaur, meat-eating theropodsThey examined 120 species.
One group of dinosaurs was evolving, changing four times as fast as all the other dinosaurs living during that period.  And over time, the fast-evolving group became birds
The scientists studied how those changes took place over 50 million years. They say that during that time, each generation got smaller and smaller. Michael Lee says that by the time the asteroid hit, the earliest birds had been living for about 100 million years.
“The bird ancestor started exploring a new kind of lifestyle which involved smaller body size, greater agility and greater ability to regulate their body heat using things like feathers and various other things.’
Mr. Lee said smaller body size was responsible for the changes.  And that, in turn, it would have made way for changes in their body structure like the addition of wings and flight feathers.  He also noted other changes seen in modern birds, such as wish bones.
About 10,000 species of birds now live on the planet.

This story was based on a report by VOA Correspondent Rosanne Skirble and adapted for Learning English by Jeri WatsonGeorge Grow was the editor

Thursday, July 31, 2014

Surf's up! Playful dolphins put pros to shame as they ride the waves during prestigious surfing competition in South Africa


  • Almost a dozen animals put on the show during the J-Bay Open earlier this month in Jeffreys Bay, South Africa

  • The Eastern Cape is famous for its dolphins and for its surfing, but it's a lucky treat to see both happen at once
  •  Photographer Stan Blumberg: 'I have surfed and scuba dived and I have never seen dolphins surf like this before'
These playful dolphins stole the show when they gatecrashed one of the world's top surfing competitions to ride the waves themselves.
The animals turned up as global surfing legends descended on Jeffreys Bay, South Africa, for the latest stop on the Association of Surfing Professionals world tour.
The 12-day J-Bay Open saw surfers compete for dominance off the shores of the Eastern Cape, famous for its dramatic waves and large numbers of bottlenose dolphins. 
But things took a surprise twist when a school of almost a dozen dolphins set out to show they were the undisputed kings of the sea in these images captured by 62-year-old Stan Blumberg.
'Two surfers were in the water at the time when a few pods of dolphins swam past and a few surfed the waves as they usually do, without breaking the surface,' he said - then they broke through and put on their show.
He added: 'In my 62 years of living at the coast, I have surfed, scuba dived, been a member of a surf lifesaving club and can honestly say that I have never before seen dolphins surf like this before.'

Surf's up! These dolphins gatecrashed one of the world's top surfing contests in Jeffreys Bay, South Africa, to put on an impressive wave-riding show of their own
Surf's up! These dolphins gatecrashed one of the world's top surfing contests in Jeffreys Bay, South Africa, to put on an impressive wave-riding show of their own
Awe: The Eastern Cape is famous for its prime surfing and schools of bottlenose dolphins, but it's a lucky treat to see both happening at the same time
Awe: The Eastern Cape is famous for its prime surfing and schools of bottlenose dolphins, but it's a lucky treat to see both happening at the same time
Breaking with convention: The dolphins swam close to the shore during the J-Bay Open, part of the Association of Surfing Professionals world championship tour
Breaking with convention: The dolphins swam close to the shore during the J-Bay Open, part of the Association of Surfing Professionals world championship tour
Preparing for their big moment: Photographer Stan Blumberg said he had lived on the coast for 62 years and never seen such an impressive dolphin surfing display
Preparing for their big moment: Photographer Stan Blumberg said he had lived on the coast for 62 years and never seen such an impressive dolphin surfing display
Build-up: Human surfers spend years honing their skills, but things came a little more naturally to these dolphins swimming off the coast of South Africa's Eastern Cape
Build-up: Human surfers spend years honing their skills, but things came a little more naturally to these dolphins swimming off the coast of South Africa's Eastern Cape
Catch them if you can! Dolphins are known for their playfulness in the wild, where they play games such as leaping as high as they can out of the water
Catch them if you can! Dolphins are known for their playfulness in the wild, where they play games such as leaping as high as they can out of the water

Tuesday, July 29, 2014

Dinosaur-Killing Asteroid Struck At Just The Wrong Time, New Study Suggests


Posted: Updated:

DINOSAUR ASTEROID IMPACT

Just before a large asteroid slammed into the Earth 66 million years ago, the diversity of plant-eating dinosaur species declined slightly, a new study suggests. That minor shift may have been enough to doom all dinosaurs when the space rock hit.
The scarcity of plant-eaters would have left them more vulnerable to starvation and population collapse after the impact, with consequences that rippled all the way up the food chain.

“The asteroid hit at a particularly bad time,” says Stephen Brusatte, a palaeontologist at the University of Edinburgh, UK. “If it had hit a few million years earlier or later, dinosaurs probably would have been much better equipped to survive.”

Brusatte and his colleagues describe this nuanced view of the famous extinction in Biological Reviews.

Palaeontologists have argued for decades about whether dinosaurs were doing well when the asteroid hit, or whether they were experiencing a worldwide drop in the number of species. To explore this question, the study pulled information from a database on global dinosaur diversity, including hundreds of fossils found in the past decade.
Localized decline

The scientists used analytical methods to account for the fact that some fossil-bearing rock formations are well-studied and others are not, which could distort the apparent number and distribution of dinosaur species. They found most dinosaurs thriving right up until the impact. “If we look at the global picture, we don't see evidence for a long-term decline,” says team member Richard Butler, a palaeontologist at the University of Birmingham, UK. “In no sense were dinosaurs doomed to extinction and the asteroid just kind of finished them off.”

But in North America, in the last 8 to 10 million years before the asteroid hit, two major groups of herbivores — duck-billed dinosaurs and the group of horned dinosaurs that included Triceratops — did decline slightly. In some places multiple species shrank to just one species. That may be because cooler climates changed the types of vegetation available to eat, says Michael Benton, a palaeontologist at the University of Bristol, UK. Plenty of dinosaur groups had recovered from such small population drops before, but not this time.

A 2012 study that modelled ancient food webs may help to explain why, says Butler. Computer simulations suggested that just a small change in dinosaur diversity made ecosystems much more likely to collapse after big environmental perturbations — such as widespread climate change brought on by an asteroid impact. Plants would have withered up; plant-eating dinosaurs would have starved; and meat-eating dinosaurs would have had little to prey on.

What if?

The latest study rounds up many of the discoveries of recent years, says David Archibald, a palaeontologist at San Diego State University in California. “From my reckoning much of it is pretty much spot on,” he says. “It is almost certainly the impact that kills off the dinosaurs.” But he disagrees with some of the data. In a review in press with the Geological Society of America, Archibald compares several rock formations from near the end of the time of dinosaurs, in Canada and the United States. He finds that the two-legged, primarily meat-eating dinosaurs known as theropods were also declining.

Brusatte says that the differences boil down to how researchers account for how well-studied or well-preserved various fossil-bearing rocks are. “It’s really only now with all these new dinosaur discoveries that people are able to even think about the nuances in any kind of detail,” he says.

The extinction set the stage for the modern world, Butler notes. Although one lineage of dinosaurs survived as modern birds, mammals began their rise only after the dinosaurs were out of the picture. ”That may never have happened if dinosaurs had never gone extinct,” says Butler. ”I think it's very likely that if the asteroid hadn't hit, we would still have dinosaurs around today.”
This story originally appeared in Nature News.

Sunday, July 20, 2014

HIV establishes viral reservoirs with surprising speed

Medical ResearchScientific ResearchHIV - AIDSHarvard Medical SchoolJohns Hopkins University
Early treatment may not be enough to prevent formation of HIV reservoirs, study says
Study suggests HIV virus can establish persistent reservoirs in just three days
In a sobering discovery, researchers say that rapid treatment of HIV-like infections in monkeys failed to prevent the establishment of persistent viral reservoirs in as little as three days.
The study, published Sunday in the journal Nature, comes on the heels of news that the so-called Mississippi Baby -- a child once considered functionally cured of HIV due to antiretroviral drug treatment hours after her birth -- had in fact been infected with the virus all along.
While researchers had begun to hope that there was a window in which the virus could be prevented from establishing a permanent foothold within its host, that possibility now seems much less likely.
"We show that the viral reservoir can be seeded substantially earlier than previously recognized," wrote lead study author and Harvard Medical School virologist James Whitney, and colleagues.
HIV attacks CD4 white blood cells -- critical components of the body's immune system. The virus then uses the cells to manufacture copies of itself, destroying the blood cell in the process and steadily eroding the body's internal defenses.
However, in some cases, the virus will lay dormant within a white blood cell, only to begin reproducing itself at a later date. The virus cannot be killed in this dormant state -- either by the body's immune system or by antiretroviral drugs -- and this latent reservoir of infection has proved to be the biggest obstacle to finding a cure.
In the latest study, researchers infected 20 adult rhesus monkeys with simian immunodeficiency virus, or SIV, the simian equivalent of HIV, the disease that causes AIDS.
Some of the monkeys were treated with a cocktail of antiretroviral drugs three days after infection, yet prior to when the virus could be detected in the monkeys' bloodstream. Other monkeys received the drug treatment at seven, 10 and 14 days after infection, when evidence of the illness could be detected.
In each case, antiretroviral therapy was stopped after 24 weeks. While researchers had hoped the virus would not reappear in the monkeys that were treated in three days, it in fact rebounded in all of the animals.
The researchers, however, did note that it took about three weeks for the virus to rebound in the monkeys that received drug treatment after three days, where it took only one or two weeks in the other monkeys.
In an accompanying News & Views article, Kai Deng and Dr. Robert Siliciano, both HIV researchers at Johns Hopkins University Medical School, noted that further research was needed to confirm the study's results.
"Substantial differences exist between SIV infection in rhesus macaques and HIV-1 infection in humans," the pair wrote.
Nonetheless, they called the paper's findings "striking," as they argued that still newer medical approaches are needed to eradicate HIV.

Tuesday, July 15, 2014

Warm Weather Stirs Up Brain-Eating Amoeba Warning

Good Morning America
 
Kansas health officials are urging swimmers to take extra care in warm freshwater, which could be home to millions of microscopic killers.
A 9-year-old Johnson County girl is the latest victim of Naegleria fowleri, a brain-eating amoeba that lurks in warm, standing water. The girl died July 9 from primary amoebic meningoencephalitis, an extremely rare but almost invariably fatal brain infection.
“We are very saddened to learn of this unfortunate circumstance, and our thoughts and prayers are with the family and friends during this difficult time,” state health officer Dr. Robert Moser said in a statement. “It is important for the public to know that infections like these are extremely rare and there are precautions one can take to lower their risk – such as nose plugs.”
Brain-Eating Amoeba Victim Shows Signs of Recovery
Fla. Boy Dies After Battling Brain-Eating Parasite
Naegleria fowleri enters the body through the nose, causing a severe frontal headache, fever, nausea and vomiting, according to the U.S. Centers for Disease Control and Prevention. Early symptoms give way to seizures, confusion and hallucinations as the amoeba migrates through the nasal cavity to the brain.
“After the start of symptoms, the disease progresses rapidly and usually causes death within about five days,” the CDC website reads.
Of 132 people infected with Naegleria fowleri in the United States between 1962 and 2013, only three have survived, according to the CDC. One survivor, a 12-year-old girl infected in 2013, was diagnosed early and treated with “therapeutic hypothermia” and the experimental drug miltefosine.
“Her recovery has been attributed to early diagnosis and treatment,” the CDC website reads.
But spotting the signs of the infection is tricky, because tests to detect the rare infection are “available in only a few laboratories in the United States,” according to the CDC.
“Because of the rarity of the infection and difficulty in initial detection, about 75 percent of diagnoses are made after the death of the patient,” the agency’s website reads.
The infection is most common in 15 southern-tier states, “with more than half of all infections occurring in Texas and Florida,” the CDC’s website reads. Three-quarters of all U.S. cases have been linked to swimming in freshwater lakes and rivers, but infections have also been associated with slip-n-slides, bathtubs and neti pots, according to the agency.
The infection is not contagious and can’t be contracted from a properly chlorinated pool or saltwater, according to the CDC.
The agency recommends the following tips for summer swimmers:
- Avoid getting water up your nose by holding your nose shut, using nose clips or keeping your head above water when swimming or splashing in warm freshwater.
- Avoid submerging your head in hot springs and other untreated thermal waters.
- Avoid stirring up sediment in shallow, warm freshwater areas.

Friday, July 11, 2014

Ebola in Africa: Can we dodge a global pandemic?

Ebola
CDC/ Cynthia Goldsmith

Right now, a fight for survival is taking place in the West African nations of Guinea, Sierra Leone and Liberia. Ebola, one of the most lethal diseases on the planet, is on a killing rampage.  In Guinea, 303 people have died. In Sierra Leone, 99 have perished, and in Guinea, 65 lives have been claimed.
Within a few days, these figures will be higher. And the disease appears to just be getting warmed up. Spread by contact with bodily fluids, Ebola is flourishing in West Africa, and could be coming soon to a place near you.
When the outbreak began in Guinea in April, the mortality rate was higher than it is now. But the virus is still an extreme hazard, and health workers must work in full bio-hazard suits in order to keep themselves from being infected by the patients they are serving. The protective suits are extremely hot in the sweltering West African climate. They are like little mobile sauna units, slowly cooking the doctors, nurses and aids working inside them.
Named after the Ebola River, the virus was first discovered in 1976 in what was then Zaire and is now the Democratic Republic of Congo. A viral disease, Ebola starts out like a bad flu, exhibiting initial symptoms of fever, weakness, headache and muscle pain – but that’s where the similarities end.
The more severe symptoms commence as early as two days after contact with the virus. Ebola is a hemorrhagic fever, meaning it causes the rupturing of blood vessels throughout the body.  Victims may bleed from the eyes, nose, mouth, ears, anus and genitals, as well as through skin ruptures. The liver, lungs, spleen and lymph nodes can be overcome by Ebola, leading to massive organ failure, and an agonizing death can follow.
There are five strains of Ebola: Zaire, Sudan, Reston, Cote d’Ivoire, and Bundibugyo. Of these, four are known to cause the disease in humans, whereas Reston does not appear to do so.  The disease is transmitted from animals to humans. Fruit bats, monkeys, and wild game may host the virus and spread it to humans, but bats in particular are on the radar of health officials. They are known as reservoir species, carrying the virus without becoming sick from the disease.
Despite urgent, high level attention from the World Health Organization and the Centers for Disease Control and Prevention, Ebola has no specific treatment, no vaccine, and no effective medicines. Bed rest and remaining hydrated appear to be as effective as any course of treatment, with a disease whose mortality rate can be as high as 90 percent. In clinics, Ebola patients are kept isolated as much as possible, and any utensils used to diagnose them must be fastidiously sterilized. Health workers take a huge risk tending to the Ebola infected, and only bio-hazard suits afford enough protection. Still, even one accidental prick from a dirty needle can lead to infection. It is very risky business.
Now, we don’t have to worry, right? Ebola is, after all, over in Africa, far removed from us. Nothing could be further from the alarming truth.
Imagine this scenario: A health worker tends to Ebola patients in Guinea, and remains healthy due to good sanitation practices. Eventually, that health worker needs to travel to the United States or Europe, and he or she boards a plane. Unknowingly, they are infected but symptom-free so far. On the long flight home, they start to feel some aches and chills, and at one point, they sneeze, sending thousands of viruses into the air through the atomized mucus expelled from the nose. Other passengers breathe that air, taking in a few viruses here and there, and they become infected.
And a global pandemic starts to roll.
This is neither a far-off scenario nor science fiction. It is a real possibility. And this is why health officials are so gravely concerned about the current Ebola outbreak. Unlike previous smaller outbreaks which have occurred in rural locations, this one is happening in hot, humid cities where crowds are dense and sanitation is sketchy; where basic hygiene is often hard to manage and many people eat wild game that might be infected. It is a perfect recipe for a massive, uncontrolled outbreak. Infecting another person is as easy as a sneeze, a kiss, cleaning up after someone, making contact with mucus, urine or feces.
The question, then, is what can you do? Except for staying away from anyone infected, you can’t do much. Right now it’s up to the health workers laboring in excessively hot bio-hazard suits, and to officials who are working hard on containment. This situation in West Africa could in fact be the start of a global disaster, or it may be another near-miss. The threat is real, and the disease is on the move. Will we dodge the Ebola bullet? Right now, all we can do is watch and wait.
Chris Kilham is a medicine hunter who researches natural remedies all over the world, from the Amazon to Siberia. He teaches ethnobotany at the University of Massachusetts Amherst, where he is Explorer In Residence. Chris advises herbal, cosmetic and pharmaceutical companies and is a regular guest on radio and TV programs worldwide. His field research is largely sponsored by Naturex of Avignon, France. Read more at MedicineHunter.com.

Thursday, July 3, 2014

US-based scientist makes potent version of H1N1 flu

H1N1
H1N1 virus. Credit: C. S. Goldsmith and A. Balish, CDC
A US-based Japanese scientist said Wednesday he has succeeded in engineering a version of the so-called swine flu virus that would be able to evade the human immune system.
The research on the 2009 H1N1 virus at a high-security lab at the University of Wisconsin, Madison has not yet been published, but was first made public July 1 by the Independent newspaper in London.
The article described virologist Yoshihiro Kawaoka, as "controversial" and said "some scientists who are aware of (the experiment) are horrified."
Kawaoka confirmed to AFP that he has been able to make changes in a particular protein that would enable the 2009 H1N1 virus to escape immune protection.
"Through selection of immune escape viruses in the laboratory under appropriate containment conditions, we were able to identify the key regions would enable 2009 H1N1 viruses to escape immunity," he said in an email.
However, he described the Independent's story—which called his research "provocative" because it sought to create a deadly flu from which humans could not escape—as "sensational."
"It is unfortunate that online news outlets choose to manipulate the message in this way to attract readers, with sensational headlines, especially in regard to science and public health matters," he said.
Kawaoka said the reason for the research was to find out how the flu virus might mutate in nature and help scientists devise better vaccines against it.
He also said he has presented his initial findings to a World Health Organization committee and it "was well received."
Controversy erupted in 2011 and 2012 over research on the H5N1 bird flu, after a Dutch and a US team of scientists each found ways to engineer a virus that could pass easily among mammals.
Concerns were raised over the potential to create a deadly pandemic like the Spanish flu of 1918-1919 that killed 50 million people.
A key worry was that bioterrorists could find a way to recreate and release such a virus, or that it could accidently escape from a research lab.
Scientists stopped their work for a time but the details of the experiments were eventually published in major scientific journals.